RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 PLCB3Q01970 1234 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 UBE3AQ05086 875 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 GRIN1Q05586 938 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 ADAM15Q13444 863 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 ZSCAN23Q3MJ62 389 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 KCNK18Q7Z418 384 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 TMEM173Q86WV6 379 aaPredicted RBP12.76□□□□□ -0.37
LINC00539-204ENST00000608957 ABI1Q8IZP0 508 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 SLC39A11Q8N1S5 342 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 VN1R2Q8NFZ6 395 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 BCL7CQ8WUZ0 217 aaPredicted RBP12.76□□□□□ -0.37
LINC00539-204ENST00000608957 KHSRPQ92945 711 aaKnown RBP eCLIP12.76□□□□□ -0.37
LINC00539-204ENST00000608957 ZNF558Q96NG5 402 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 NACC1Q96RE7 527 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 NUP62CLQ9H1M0 184 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 RNF39Q9H2S5 420 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 NRDE2Q9H7Z3 1164 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 TLR9Q9NR96 1032 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 AAASQ9NRG9 546 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 TBC1D13Q9NVG8 400 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 LRWD1Q9UFC0 647 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 INPP5FQ9Y2H2 1132 aa12.76□□□□□ -0.37
LINC00539-204ENST00000608957 VWA3AA6NCI4 1184 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 GRXCR2A6NFK2 248 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 INO80B-WBP1J3KQ70 363 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 KINO60870 393 aaKnown RBP12.75□□□□□ -0.37
LINC00539-204ENST00000608957 ARF4P18085 180 aaPredicted RBP12.75□□□□□ -0.37
LINC00539-204ENST00000608957 CYP11B2P19099 503 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 MUTP22033 750 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 NRIP1P48552 1158 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 RAB27AP51159 221 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 PLXNA3P51805 1871 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 NDUFA8P51970 172 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 BCAR1P56945 870 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 SNW1Q13573 536 aaKnown RBP12.75□□□□□ -0.37
LINC00539-204ENST00000608957 TFDP1Q14186 410 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 PDIA5Q14554 519 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 CLUL1Q15846 466 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 NOMO2Q5JPE7 1267 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 PLPP4Q5VZY2 271 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 CDCA2Q69YH5 1023 aaPredicted RBP12.75□□□□□ -0.37
LINC00539-204ENST00000608957 PTCRAQ6ISU1 281 aaPredicted RBP12.75□□□□□ -0.37
LINC00539-204ENST00000608957 PADI6Q6TGC4 694 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 EP400NLQ6ZTU2 488 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 RBM23Q86U06 439 aaKnown RBP12.75□□□□□ -0.37
LINC00539-204ENST00000608957 CDR2LQ86X02 465 aaPredicted RBP12.75□□□□□ -0.37
LINC00539-204ENST00000608957 ZNF280BQ86YH2 543 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 FMR1NBQ8N0W7 255 aaPredicted RBP12.75□□□□□ -0.37
LINC00539-204ENST00000608957 ENGASEQ8NFI3 743 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 ERMNQ8TAM6 284 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 SNX29Q8TEQ0 813 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 NFKBIZQ9BYH8 718 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 CSRNP2Q9H175 543 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 CLSTN2Q9H4D0 955 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 FAM13BQ9NYF5 915 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 DNAJB4Q9UDY4 337 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 KIAA1024Q9UPX6 916 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 LZTS1Q9Y250 596 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 HPSEQ9Y251 543 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 HES2Q9Y543 173 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 C5orf42Q9H799 3197 aa12.75□□□□□ -0.37
LINC00539-204ENST00000608957 CITO14578 2027 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 PDCD11Q14690 1871 aaKnown RBP12.74□□□□□ -0.37
LINC00539-204ENST00000608957 ARHGEF35A5YM69 484 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 LRRIQ4A6NIV6 560 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 HIDE1A8MVS5 230 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 E9PMD0 336 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 PER2O15055 1255 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 DDHD2O94830 711 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 ERLIN2O94905 339 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 SKIP12755 728 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 AXLP30530 894 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 LONP1P36776 959 aaKnown RBP12.74□□□□□ -0.37
LINC00539-204ENST00000608957 HAUS3Q68CZ6 603 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 DTHD1Q6ZMT9 781 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 FAM178BQ8IXR5 827 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 EFHBQ8N7U6 833 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 MSLNLQ96KJ4 702 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 CCDC43Q96MW1 224 aaKnown RBP12.74□□□□□ -0.37
LINC00539-204ENST00000608957 VN1R3Q9BXE9 311 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 MRPL9Q9BYD2 267 aaKnown RBP12.74□□□□□ -0.37
LINC00539-204ENST00000608957 BHMT2Q9H2M3 363 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 RSAD1Q9HA92 442 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 MIOSQ9NXC5 875 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 SPG21Q9NZD8 308 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 CLEC1BQ9P126 229 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 USP20Q9Y2K6 914 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 IPPQ9Y573 584 aa12.74□□□□□ -0.37
LINC00539-204ENST00000608957 C2orf16Q68DN1 1984 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 VWA8A3KMH1 1905 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 MTCL1Q9Y4B5 1905 aaKnown RBP12.73□□□□□ -0.37
LINC00539-204ENST00000608957 MBTPS2O43462 519 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 ZC3H11AO75152 810 aaKnown RBP eCLIP12.73□□□□□ -0.37
LINC00539-204ENST00000608957 LETM1O95202 739 aaPredicted RBP12.73□□□□□ -0.37
LINC00539-204ENST00000608957 GALTP07902 379 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 SYKP43405 635 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 SLC11A1P49279 550 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 ZNF445P59923 1031 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 KCNC3Q14003 757 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 DUSP6Q16828 381 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms