RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 NPTXRO95502 500 aa18.56■□□□□ 0.56
TRIM28-215ENST00000601150 STAT6P42226 847 aa18.56■□□□□ 0.56
TRIM28-215ENST00000601150 SMTNP53814 917 aa18.56■□□□□ 0.56
TRIM28-215ENST00000601150 CACNB1Q02641 598 aaPredicted RBP18.56■□□□□ 0.56
TRIM28-215ENST00000601150 CSPP1Q1MSJ5 1256 aa18.56■□□□□ 0.56
TRIM28-215ENST00000601150 NOMO2Q5JPE7 1267 aa18.56■□□□□ 0.56
TRIM28-215ENST00000601150 COLGALT1Q8NBJ5 622 aa18.56■□□□□ 0.56
TRIM28-215ENST00000601150 URGCPQ8TCY9 931 aa18.56■□□□□ 0.56
TRIM28-215ENST00000601150 LMAN2LQ9H0V9 348 aa18.56■□□□□ 0.56
TRIM28-215ENST00000601150 PDZD7Q9H5P4 517 aa18.56■□□□□ 0.56
TRIM28-215ENST00000601150 LARSQ9P2J5 1176 aaKnown RBP18.56■□□□□ 0.56
TRIM28-215ENST00000601150 INPP5FQ9Y2H2 1132 aa18.56■□□□□ 0.56
TRIM28-215ENST00000601150 ATP6V1DQ9Y5K8 247 aa18.56■□□□□ 0.56
TRIM28-215ENST00000601150 GRM6O15303 877 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 SLC16A4O15374 487 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 FAM13AO94988 1023 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 EDN1P05305 212 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 ME1P48163 572 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 GIT2Q14161 759 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 KLHL23Q8NBE8 558 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 ZNF558Q96NG5 402 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 PANK2Q9BZ23 570 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 NXF3Q9H4D5 531 aaKnown RBP18.55■□□□□ 0.56
TRIM28-215ENST00000601150 RCOR1Q9UKL0 485 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 PLAGL2Q9UPG8 496 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 USP20Q9Y2K6 914 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 HES2Q9Y543 173 aa18.55■□□□□ 0.56
TRIM28-215ENST00000601150 A0A087X0B3 334 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 H0YCG3 227 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 TBCAO75347 108 aaKnown RBP18.54■□□□□ 0.56
TRIM28-215ENST00000601150 ITGB1P05556 798 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 KRT85P78386 507 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 RNASELQ05823 741 aaKnown RBP18.54■□□□□ 0.56
TRIM28-215ENST00000601150 AXDND1Q5T1B0 1012 aaPredicted RBP18.54■□□□□ 0.56
TRIM28-215ENST00000601150 NT5DC1Q5TFE4 455 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 ATF7IP2Q5U623 682 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 SHC4Q6S5L8 630 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 KCNT2Q6UVM3 1135 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 SV2BQ7L1I2 683 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 APBB1IPQ7Z5R6 666 aaPredicted RBP18.54■□□□□ 0.56
TRIM28-215ENST00000601150 PDILTQ8N807 584 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 ADPGKQ9BRR6 497 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 APOL6Q9BWW8 343 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 PARVGQ9HBI0 331 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 ALG13Q9NP73 1137 aaKnown RBP18.54■□□□□ 0.56
TRIM28-215ENST00000601150 TBC1D13Q9NVG8 400 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 PCDHA7Q9UN72 937 aa18.54■□□□□ 0.56
TRIM28-215ENST00000601150 COL6A3P12111 3177 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 MAPTP10636 758 aaKnown RBP18.53■□□□□ 0.56
TRIM28-215ENST00000601150 ZNF131P52739 623 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 NCKAP1LP55160 1127 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 STRN3Q13033 797 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 TIGD5Q53EQ6 642 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 EEF1DP3Q658K8 133 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 TAS1R3Q7RTX0 852 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 THNSL1Q8IYQ7 743 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 MYCT1Q8N699 235 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 TMEM161BQ8NDZ6 487 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 SPPL3Q8TCT6 385 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 MRPL4Q9BYD3 311 aaKnown RBP18.53■□□□□ 0.56
TRIM28-215ENST00000601150 RNF39Q9H2S5 420 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 ZHX3Q9H4I2 956 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 KANSL3Q9P2N6 904 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 GIT1Q9Y2X7 761 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 ZMYM2Q9UBW7 1377 aa18.53■□□□□ 0.56
TRIM28-215ENST00000601150 CARNS1A5YM72 827 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 INPPL1O15357 1258 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 FGF18O76093 207 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 SCP2P22307 547 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 PPM1AP35813 382 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 MLH1P40692 756 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 UBE3AQ05086 875 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 DCAF4L1Q3SXM0 396 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 SPATA32Q96LK8 384 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 GAD1Q99259 594 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 ACO2Q99798 780 aaKnown RBP18.52■□□□□ 0.56
TRIM28-215ENST00000601150 FAM13BQ9NYF5 915 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 SPG21Q9NZD8 308 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 TNFSF13BQ9Y275 285 aa18.52■□□□□ 0.56
TRIM28-215ENST00000601150 ARL5CA6NH57 179 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 MYMKA6NI61 221 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 ZC3H11AO75152 810 aaKnown RBP eCLIP18.51■□□□□ 0.55
TRIM28-215ENST00000601150 AKAP5P24588 427 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 ALDH7A1P49419 539 aaKnown RBP18.51■□□□□ 0.55
TRIM28-215ENST00000601150 AFF1P51825 1210 aaKnown RBP18.51■□□□□ 0.55
TRIM28-215ENST00000601150 BCAR1P56945 870 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 NUCB2P80303 420 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 DYMQ7RTS9 669 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 HAUS6Q7Z4H7 955 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 LEO1Q8WVC0 666 aaPredicted RBP18.51■□□□□ 0.55
TRIM28-215ENST00000601150 POF1BQ8WVV4 589 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 DDX12PQ92771 950 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 KCNN1Q92952 543 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 TARS2Q9BW92 718 aaKnown RBP18.51■□□□□ 0.55
TRIM28-215ENST00000601150 GBP3Q9H0R5 595 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 CUEDC2Q9H467 287 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 NRDE2Q9H7Z3 1164 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 PARP2Q9UGN5 583 aa18.51■□□□□ 0.55
TRIM28-215ENST00000601150 TRAK2O60296 914 aa18.5■□□□□ 0.55
TRIM28-215ENST00000601150 POMCP01189 267 aa18.5■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 100.3 ms