RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 PAK2Q13177 524 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 NFIL3Q16649 462 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 EDRF1Q3B7T1 1238 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 SLFN12LQ6IEE8 588 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 SLC39A4Q6P5W5 647 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 NOTUMQ6P988 496 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 TMEM174Q8WUU8 243 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 TSG101Q99816 390 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 BPIFA3Q9BQP9 254 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 TSPY26PQ9H489 355 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 PTPRHQ9HD43 1115 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 CHST12Q9NRB3 414 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 PRKAG2Q9UGJ0 569 aa15.72■□□□□ 0.11
UPF1-211ENST00000600868 ANKRD63C9JTQ0 380 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 N4BP3O15049 544 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 GARTP22102 1010 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 ITGB8P26012 769 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 ADSSP30520 456 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 PMS1P54277 932 aaKnown RBP15.71■□□□□ 0.11
UPF1-211ENST00000600868 NFX1Q12986 1120 aaKnown RBP15.71■□□□□ 0.11
UPF1-211ENST00000600868 MYBPC2Q14324 1141 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 PLEKHG4Q58EX7 1191 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 ANKRD40Q6AI12 368 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 MFSD5Q6N075 450 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 TTI2Q6NXR4 508 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 C12orf56Q8IXR9 622 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 C7orf61Q8IZ16 206 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 CCDC51Q96ER9 411 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 SCLYQ96I15 445 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 CPB2Q96IY4 423 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 IFIH1Q9BYX4 1025 aaKnown RBP15.71■□□□□ 0.11
UPF1-211ENST00000600868 IKZF4Q9H2S9 585 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 PDZD7Q9H5P4 517 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 AGPAT3Q9NRZ7 376 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 USP20Q9Y2K6 914 aa15.71■□□□□ 0.11
UPF1-211ENST00000600868 A0A0B4J269 797 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 TRIM49BA6NDI0 452 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 ABLIM1O14639 778 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 KIAA0391O15091 583 aaKnown RBP15.7■□□□□ 0.1
UPF1-211ENST00000600868 EVI5O60447 810 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 ZNF165P49910 485 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 MCL1Q07820 350 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 DSC3Q14574 896 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 TMEM132AQ24JP5 1023 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 MPZL3Q6UWV2 235 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 APBB1IPQ7Z5R6 666 aaPredicted RBP15.7■□□□□ 0.1
UPF1-211ENST00000600868 SLC9A9Q8IVB4 645 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 ZC3H3Q8IXZ2 948 aaKnown RBP15.7■□□□□ 0.1
UPF1-211ENST00000600868 ENOX1Q8TC92 643 aaKnown RBP15.7■□□□□ 0.1
UPF1-211ENST00000600868 APBB2Q92870 758 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 ZBTB45Q96K62 511 aaPredicted RBP15.7■□□□□ 0.1
UPF1-211ENST00000600868 MED15Q96RN5 788 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 TMX1Q9H3N1 280 aa15.7■□□□□ 0.1
UPF1-211ENST00000600868 PIN4Q9Y237 131 aaKnown RBP15.7■□□□□ 0.1
UPF1-211ENST00000600868 TISP43B9A030 160 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 CLDN3O15551 220 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 NR3C1P04150 777 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 RPL13P26373 211 aaKnown RBP15.69■□□□□ 0.1
UPF1-211ENST00000600868 STX17P56962 302 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 FKBP3Q00688 224 aaKnown RBP15.69■□□□□ 0.1
UPF1-211ENST00000600868 EEF1DP3Q658K8 133 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 ARMCX5Q6P1M9 558 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 SLC27A1Q6PCB7 646 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 TMEM199Q8N511 208 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 POMGNT1Q8WZA1 660 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 SEPT8Q92599 483 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 DUSP9Q99956 384 aaKnown RBP15.69■□□□□ 0.1
UPF1-211ENST00000600868 ADPGKQ9BRR6 497 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 CBWD1Q9BRT8 395 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 TCHPQ9BT92 498 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 TRAIPQ9BWF2 469 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 FTHL17Q9BXU8 183 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 DMAC2Q9NW81 257 aa15.69■□□□□ 0.1
UPF1-211ENST00000600868 SCN5AQ14524 2016 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 IKBKBO14920 756 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 CLIC2O15247 247 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 MCF2P10911 925 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 ZSCAN20P17040 1043 aaPredicted RBP15.68■□□□□ 0.1
UPF1-211ENST00000600868 HSP90AA2PQ14568 343 aaPredicted RBP15.68■□□□□ 0.1
UPF1-211ENST00000600868 NOLC1Q14978 699 aaKnown RBP eCLIP15.68■□□□□ 0.1
UPF1-211ENST00000600868 DCAF4L1Q3SXM0 396 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 ZNF568Q3ZCX4 644 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 SPATA1Q5VX52 437 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 RPUSD2Q8IZ73 545 aaKnown RBP15.68■□□□□ 0.1
UPF1-211ENST00000600868 DBF4BQ8NFT6 615 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 DPF3Q92784 378 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 VWCEQ96DN2 955 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 MSTO1Q9BUK6 570 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 HAPLN2Q9GZV7 340 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 HSPBP1Q9NZL4 362 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 ANKFY1Q9P2R3 1169 aa15.68■□□□□ 0.1
UPF1-211ENST00000600868 SMTNL1A8MU46 457 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 CETN3O15182 167 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 FGFR1OPO95684 399 aaKnown RBP15.67■□□□□ 0.1
UPF1-211ENST00000600868 PFKMP08237 780 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 CSF2RAP15509 400 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 NR2F2P24468 414 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 MATR3P43243 847 aaKnown RBP eCLIP15.67■□□□□ 0.1
UPF1-211ENST00000600868 MYL5Q02045 173 aa15.67■□□□□ 0.1
UPF1-211ENST00000600868 ADAM9Q13443 819 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms