RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 COPB1P53618 953 aaKnown RBP16.88■□□□□ 0.29
UPF1-206ENST00000598471 MARSP56192 900 aaKnown RBP16.88■□□□□ 0.29
UPF1-206ENST00000598471 PPP2R3AQ06190 1150 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 ATF7IP2Q5U623 682 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 APBB1IPQ7Z5R6 666 aaPredicted RBP16.88■□□□□ 0.29
UPF1-206ENST00000598471 FRMD5Q7Z6J6 570 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 FAM186BQ8IYM0 893 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 ANKLE1Q8NAG6 615 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 OSMRQ99650 979 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 ACO2Q99798 780 aaKnown RBP16.88■□□□□ 0.29
UPF1-206ENST00000598471 CBWD1Q9BRT8 395 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 TUBGCP2Q9BSJ2 902 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 PCIF1Q9H4Z3 704 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 KIAA1586Q9HCI6 787 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 ANKFY1Q9P2R3 1169 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 ARMCX3Q9UH62 379 aaPredicted RBP16.88■□□□□ 0.29
UPF1-206ENST00000598471 STYXL1Q9Y6J8 313 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 CNTNAP2Q9UHC6 1331 aa16.88■□□□□ 0.29
UPF1-206ENST00000598471 TISP43B9A030 160 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 PES1O00541 588 aaKnown RBP16.87■□□□□ 0.29
UPF1-206ENST00000598471 N4BP3O15049 544 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 MAPK13O15264 365 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 CLDN3O15551 220 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 LDHAP00338 332 aaKnown RBP16.87■□□□□ 0.29
UPF1-206ENST00000598471 KRT13P13646 458 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 PRKCSHP14314 528 aaPredicted RBP16.87■□□□□ 0.29
UPF1-206ENST00000598471 DARSP14868 501 aaKnown RBP16.87■□□□□ 0.29
UPF1-206ENST00000598471 EIF4BP23588 611 aaKnown RBP16.87■□□□□ 0.29
UPF1-206ENST00000598471 MAN2A1Q16706 1144 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 SLC39A4Q6P5W5 647 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 TSHZ1Q6ZSZ6 1077 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 CATSPER4Q7RTX7 472 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 CCDC155Q8N6L0 562 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 MRFAP1L1Q96HT8 127 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 TCHPQ9BT92 498 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 MSTO1Q9BUK6 570 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 NOC4LQ9BVI4 516 aaKnown RBP16.87■□□□□ 0.29
UPF1-206ENST00000598471 CELF4Q9BZC1 486 aaKnown RBP16.87■□□□□ 0.29
UPF1-206ENST00000598471 XPO4Q9C0E2 1151 aaKnown RBP16.87■□□□□ 0.29
UPF1-206ENST00000598471 MINDY3Q9H8M7 445 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 TRMT13Q9NUP7 481 aaKnown RBP16.87■□□□□ 0.29
UPF1-206ENST00000598471 TAB2Q9NYJ8 693 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 MROH7Q68CQ1 1323 aa16.87■□□□□ 0.29
UPF1-206ENST00000598471 A0A1B0GTH6 734 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 LRRC10BA6NIK2 292 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 TLR3O15455 904 aaKnown RBP16.86■□□□□ 0.29
UPF1-206ENST00000598471 AP5Z1O43299 807 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 AKAP3O75969 853 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 ADSSP30520 456 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 THPOP40225 353 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 SNX17Q15036 470 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 MPZL3Q6UWV2 235 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.86■□□□□ 0.29
UPF1-206ENST00000598471 USP37Q86T82 979 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 GPD1LQ8N335 351 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 VPS16Q9H269 839 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 AGO2Q9UKV8 859 aaKnown RBP16.86■□□□□ 0.29
UPF1-206ENST00000598471 TNFSF13BQ9Y275 285 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 UTP18Q9Y5J1 556 aaKnown RBP eCLIP16.86■□□□□ 0.29
UPF1-206ENST00000598471 CDY2AQ9Y6F7 541 aa16.86■□□□□ 0.29
UPF1-206ENST00000598471 A0A0B4J269 797 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 EXTL3O43909 919 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 B4GALT4O60513 344 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 EDN1P05305 212 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 CTSHP09668 335 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 CDC25BP30305 580 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 AXLP30530 894 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 CASP4P49662 377 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 RGS19P49795 217 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 CCDC173Q0VFZ6 552 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 NOLC1Q14978 699 aaKnown RBP eCLIP16.85■□□□□ 0.29
UPF1-206ENST00000598471 AMHR2Q16671 573 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 ZNF568Q3ZCX4 644 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 FKBP15Q5T1M5 1219 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 INTS8Q75QN2 995 aaKnown RBP16.85■□□□□ 0.29
UPF1-206ENST00000598471 TRIM59Q8IWR1 403 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 ADPGKQ9BRR6 497 aa16.85■□□□□ 0.29
UPF1-206ENST00000598471 SENP6Q9GZR1 1112 aaPredicted RBP16.85■□□□□ 0.29
UPF1-206ENST00000598471 KIAA0100Q14667 2235 aaKnown RBP16.84■□□□□ 0.29
UPF1-206ENST00000598471 LGALS16A8MUM7 142 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 B4GALT5O43286 388 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 TSPAN1O60635 241 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 MNX1P50219 401 aaPredicted RBP16.84■□□□□ 0.29
UPF1-206ENST00000598471 CDK7P50613 346 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 MCL1Q07820 350 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 SNRNP35Q16560 246 aaKnown RBP16.84■□□□□ 0.29
UPF1-206ENST00000598471 KYAT1Q16773 422 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 VWA3BQ502W6 1294 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 APTXQ7Z2E3 356 aaKnown RBP16.84■□□□□ 0.29
UPF1-206ENST00000598471 DRC7Q8IY82 874 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 CAGE1Q8TC20 777 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 SAAL1Q96ER3 474 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 FBXL18Q96ME1 805 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 NAP1L5Q96NT1 182 aaPredicted RBP16.84■□□□□ 0.29
UPF1-206ENST00000598471 TRPV6Q9H1D0 765 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 CDHR5Q9HBB8 845 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 RTN4Q9NQC3 1192 aaKnown RBP16.84■□□□□ 0.29
UPF1-206ENST00000598471 USP20Q9Y2K6 914 aa16.84■□□□□ 0.29
UPF1-206ENST00000598471 GOLGA8IPA6NC78 632 aa16.83■□□□□ 0.28
UPF1-206ENST00000598471 ZNF233A6NK53 670 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms