RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 TCF25Q9BQ70 676 aa18.39■□□□□ 0.53
USHBP1-208ENST00000598309 TMEM175Q9BSA9 504 aa18.39■□□□□ 0.53
USHBP1-208ENST00000598309 NXF3Q9H4D5 531 aaKnown RBP18.39■□□□□ 0.53
USHBP1-208ENST00000598309 GIT1Q9Y2X7 761 aa18.39■□□□□ 0.53
USHBP1-208ENST00000598309 MORC2Q9Y6X9 1032 aaPredicted RBP18.39■□□□□ 0.53
USHBP1-208ENST00000598309 ARL5CA6NH57 179 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 STX6O43752 255 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 HIP1RO75146 1068 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 NPTXRO95502 500 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 GALTP07902 379 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 GTF2F1P35269 517 aaKnown RBP eCLIP18.38■□□□□ 0.53
USHBP1-208ENST00000598309 LTBRP36941 435 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 MAPK7Q13164 816 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 ADAM15Q13444 863 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 PTPAQ15257 358 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.38■□□□□ 0.53
USHBP1-208ENST00000598309 CALML4Q96GE6 196 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 IGSF21Q96ID5 467 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 FAM193BQ96PV7 902 aaPredicted RBP18.38■□□□□ 0.53
USHBP1-208ENST00000598309 GAD1Q99259 594 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 KIFC3Q9BVG8 833 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 RNF39Q9H2S5 420 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 ZSCAN16Q9H4T2 348 aaPredicted RBP18.38■□□□□ 0.53
USHBP1-208ENST00000598309 PDZD7Q9H5P4 517 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 TLE6Q9H808 572 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 ENTPD7Q9NQZ7 604 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 FOXD4L1Q9NU39 408 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 STK39Q9UEW8 545 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 HES2Q9Y543 173 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 PCDHGC5Q9Y5F6 944 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 XIRP2A4UGR9 3374 aa18.38■□□□□ 0.53
USHBP1-208ENST00000598309 H3BQ06 376 aaPredicted RBP18.37■□□□□ 0.53
USHBP1-208ENST00000598309 B4GALT3O60512 393 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 TBX10O75333 385 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 PLA2G4BP0C869 781 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 PDIA4P13667 645 aaKnown RBP18.37■□□□□ 0.53
USHBP1-208ENST00000598309 MLH1P40692 756 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 NPTX2P47972 431 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 NRIP1P48552 1158 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 AFF1P51825 1210 aaKnown RBP18.37■□□□□ 0.53
USHBP1-208ENST00000598309 SLC12A3P55017 1021 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 PEX3P56589 373 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 BMS1Q14692 1282 aaKnown RBP18.37■□□□□ 0.53
USHBP1-208ENST00000598309 DUSP6Q16828 381 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 PLPP4Q5VZY2 271 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 EP400NLQ6ZTU2 488 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 DDX53Q86TM3 631 aaKnown RBP18.37■□□□□ 0.53
USHBP1-208ENST00000598309 TMEM173Q86WV6 379 aaPredicted RBP18.37■□□□□ 0.53
USHBP1-208ENST00000598309 CDR2LQ86X02 465 aaPredicted RBP18.37■□□□□ 0.53
USHBP1-208ENST00000598309 ZNF280BQ86YH2 543 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 ADPGKQ9BRR6 497 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 IGFLR1Q9H665 355 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 ARHGAP28Q9P2N2 729 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 DNAJB4Q9UDY4 337 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 KCNG1Q9UIX4 513 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 FAM50BQ9Y247 325 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 CLIC4Q9Y696 253 aa18.37■□□□□ 0.53
USHBP1-208ENST00000598309 GRXCR2A6NFK2 248 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 TTLL13PA6NNM8 815 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 CCDC169A6NNP5 214 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 NT5C1B-RDH14C9J2C7 533 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 TNFRSF10AO00220 468 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 POMCP01189 267 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 SSBP05455 408 aaKnown RBP eCLIP18.36■□□□□ 0.53
USHBP1-208ENST00000598309 SLC11A1P49279 550 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 GRIN1Q05586 938 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 DSC1Q08554 894 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 SMC1AQ14683 1233 aaKnown RBP18.36■□□□□ 0.53
USHBP1-208ENST00000598309 TMEM132AQ24JP5 1023 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 DCAF4L1Q3SXM0 396 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 PTCRAQ6ISU1 281 aaPredicted RBP18.36■□□□□ 0.53
USHBP1-208ENST00000598309 PLIN2Q99541 437 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 APOL6Q9BWW8 343 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 CCSER1Q9C0I3 900 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 GBP3Q9H0R5 595 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 TMEM134Q9H6X4 195 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 POLD4Q9HCU8 107 aa18.36■□□□□ 0.53
USHBP1-208ENST00000598309 RBM19Q9Y4C8 960 aaKnown RBP18.36■□□□□ 0.53
USHBP1-208ENST00000598309 K7ERI5 159 aa18.35■□□□□ 0.53
USHBP1-208ENST00000598309 LINC01565O15544 149 aa18.35■□□□□ 0.53
USHBP1-208ENST00000598309 DDHD2O94830 711 aa18.35■□□□□ 0.53
USHBP1-208ENST00000598309 EDN1P05305 212 aa18.35■□□□□ 0.53
USHBP1-208ENST00000598309 LIG1P18858 919 aa18.35■□□□□ 0.53
USHBP1-208ENST00000598309 NDUFV1P49821 464 aa18.35■□□□□ 0.53
USHBP1-208ENST00000598309 SCNN1GP51170 649 aa18.35■□□□□ 0.53
USHBP1-208ENST00000598309 DLX2Q07687 328 aaPredicted RBP18.35■□□□□ 0.53
USHBP1-208ENST00000598309 TMC7Q7Z402 723 aa18.35■□□□□ 0.53
USHBP1-208ENST00000598309 APBB1IPQ7Z5R6 666 aaPredicted RBP18.35■□□□□ 0.53
USHBP1-208ENST00000598309 RBM23Q86U06 439 aaKnown RBP18.35■□□□□ 0.53
USHBP1-208ENST00000598309 SPIRE2Q8WWL2 714 aa18.35■□□□□ 0.53
USHBP1-208ENST00000598309 ZFP42Q96MM3 310 aa18.35■□□□□ 0.53
USHBP1-208ENST00000598309 ZBP1Q9H171 429 aa18.35■□□□□ 0.53
USHBP1-208ENST00000598309 KMT5AQ9NQR1 393 aa18.35■□□□□ 0.53
USHBP1-208ENST00000598309 FBXO2Q9UK22 296 aaPredicted RBP18.35■□□□□ 0.53
USHBP1-208ENST00000598309 HIDE1A8MVS5 230 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 GLP2RO95838 553 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 ALDH2P05091 517 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 SRGAP2BP0DMP2 458 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 CTSAP10619 480 aa18.34■□□□□ 0.53
USHBP1-208ENST00000598309 PLS3P13797 630 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms