RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 P2RX5Q93086 422 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 C11orf84Q9BUA3 381 aaPredicted RBP16.54■□□□□ 0.24
UPF1-202ENST00000594243 EIF2AQ9BY44 585 aaKnown RBP16.54■□□□□ 0.24
UPF1-202ENST00000594243 ZHX3Q9H4I2 956 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 RSAD1Q9HA92 442 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 KANSL3Q9P2N6 904 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 IPPQ9Y573 584 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 PCDHB12Q9Y5F1 795 aa16.54■□□□□ 0.24
UPF1-202ENST00000594243 A0A087X0B3 334 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 TRAK2O60296 914 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 OFD1O75665 1012 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 NPTXRO95502 500 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 ZNF131P52739 623 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 AMPD3Q01432 767 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 CSPP1Q1MSJ5 1256 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 ATF7IP2Q5U623 682 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 RESP18Q5W5W9 173 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 AGMOQ6ZNB7 445 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 DYMQ7RTS9 669 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 CDR2LQ86X02 465 aaPredicted RBP16.53■□□□□ 0.24
UPF1-202ENST00000594243 SLC17A8Q8NDX2 589 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 URGCPQ8TCY9 931 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 DDX12PQ92771 950 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 MRPL4Q9BYD3 311 aaKnown RBP16.53■□□□□ 0.24
UPF1-202ENST00000594243 TNFSF13BQ9Y275 285 aa16.53■□□□□ 0.24
UPF1-202ENST00000594243 CARNS1A5YM72 827 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 MYMKA6NI61 221 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 LPXNO60711 386 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 LAG3P18627 525 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 NCKAP1LP55160 1127 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 E2F4Q16254 413 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 PTPROQ16827 1216 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 NOMO2Q5JPE7 1267 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 NT5DC1Q5TFE4 455 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 LRRC55Q6ZSA7 311 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 HAUS6Q7Z4H7 955 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 TMEM161BQ8NDZ6 487 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 GDPD5Q8WTR4 605 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 KCNN1Q92952 543 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 TNMDQ9H2S6 317 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 PDZD7Q9H5P4 517 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 CWH43Q9H720 699 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 GIT1Q9Y2X7 761 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 MTCH2Q9Y6C9 303 aa16.52■□□□□ 0.24
UPF1-202ENST00000594243 TTLL13PA6NNM8 815 aa16.51■□□□□ 0.23
UPF1-202ENST00000594243 MEIS3P2A8K0S8 358 aa16.51■□□□□ 0.23
UPF1-202ENST00000594243 POLR2DO15514 142 aaKnown RBP16.51■□□□□ 0.23
UPF1-202ENST00000594243 MAPTP10636 758 aaKnown RBP16.51■□□□□ 0.23
UPF1-202ENST00000594243 CMA1P23946 247 aa16.51■□□□□ 0.23
UPF1-202ENST00000594243 DCAF4L1Q3SXM0 396 aa16.51■□□□□ 0.23
UPF1-202ENST00000594243 FAM178BQ8IXR5 827 aa16.51■□□□□ 0.23
UPF1-202ENST00000594243 MAFAQ8NHW3 353 aaPredicted RBP16.51■□□□□ 0.23
UPF1-202ENST00000594243 DHX58Q96C10 678 aa16.51■□□□□ 0.23
UPF1-202ENST00000594243 ACO2Q99798 780 aaKnown RBP16.51■□□□□ 0.23
UPF1-202ENST00000594243 LMAN2LQ9H0V9 348 aa16.51■□□□□ 0.23
UPF1-202ENST00000594243 MAGEF1Q9HAY2 307 aa16.51■□□□□ 0.23
UPF1-202ENST00000594243 SEL1LQ9UBV2 794 aa16.51■□□□□ 0.23
UPF1-202ENST00000594243 CIZ1Q9ULV3 898 aaPredicted RBP16.51■□□□□ 0.23
UPF1-202ENST00000594243 INPP5FQ9Y2H2 1132 aa16.51■□□□□ 0.23
UPF1-202ENST00000594243 HES2Q9Y543 173 aa16.51■□□□□ 0.23
UPF1-202ENST00000594243 EDN1P05305 212 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 GAP43P17677 238 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 ALDH7A1P49419 539 aaKnown RBP16.5■□□□□ 0.23
UPF1-202ENST00000594243 RNASELQ05823 741 aaKnown RBP16.5■□□□□ 0.23
UPF1-202ENST00000594243 TAS1R3Q7RTX0 852 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 KLHL23Q8NBE8 558 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 COLGALT1Q8NBJ5 622 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 DNAJC19Q96DA6 116 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 CHAMP1Q96JM3 812 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 ZNF558Q96NG5 402 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 FAM193BQ96PV7 902 aaPredicted RBP16.5■□□□□ 0.23
UPF1-202ENST00000594243 TCHPQ9BT92 498 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 TARS2Q9BW92 718 aaKnown RBP16.5■□□□□ 0.23
UPF1-202ENST00000594243 APOL6Q9BWW8 343 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 RNF39Q9H2S5 420 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 NXF3Q9H4D5 531 aaKnown RBP16.5■□□□□ 0.23
UPF1-202ENST00000594243 TBC1D13Q9NVG8 400 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 KBTBD4Q9NVX7 518 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 PARP2Q9UGN5 583 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 KCNH3Q9ULD8 1083 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 PLAGL2Q9UPG8 496 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 USP20Q9Y2K6 914 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 RALGAPA2Q2PPJ7 1873 aa16.5■□□□□ 0.23
UPF1-202ENST00000594243 FNDC1Q4ZHG4 1894 aaPredicted RBP16.5■□□□□ 0.23
UPF1-202ENST00000594243 ARL5CA6NH57 179 aa16.49■□□□□ 0.23
UPF1-202ENST00000594243 K7ENM7 598 aa16.49■□□□□ 0.23
UPF1-202ENST00000594243 IDEP14735 1019 aa16.49■□□□□ 0.23
UPF1-202ENST00000594243 AKAP5P24588 427 aa16.49■□□□□ 0.23
UPF1-202ENST00000594243 EEF1DP3Q658K8 133 aa16.49■□□□□ 0.23
UPF1-202ENST00000594243 KCNT2Q6UVM3 1135 aa16.49■□□□□ 0.23
UPF1-202ENST00000594243 ZPBP2Q6X784 338 aa16.49■□□□□ 0.23
UPF1-202ENST00000594243 THNSL1Q8IYQ7 743 aa16.49■□□□□ 0.23
UPF1-202ENST00000594243 MRPL38Q96DV4 380 aaKnown RBP16.49■□□□□ 0.23
UPF1-202ENST00000594243 ST6GALNAC4Q9H4F1 302 aa16.49■□□□□ 0.23
UPF1-202ENST00000594243 PTPRHQ9HD43 1115 aa16.49■□□□□ 0.23
UPF1-202ENST00000594243 ALG13Q9NP73 1137 aaKnown RBP16.49■□□□□ 0.23
UPF1-202ENST00000594243 TBX20Q9UMR3 447 aa16.49■□□□□ 0.23
UPF1-202ENST00000594243 INPPL1O15357 1258 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 TOM1L1O75674 476 aa16.48■□□□□ 0.23
UPF1-202ENST00000594243 FGF18O76093 207 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms