RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 LMBRD2Q68DH5 695 aaPredicted RBP10.57□□□□□ -0.72
LIG3-216ENST00000593099 SRGAP1Q7Z6B7 1085 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 COPS5Q92905 334 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 PURBQ96QR8 312 aaKnown RBP10.57□□□□□ -0.72
LIG3-216ENST00000593099 BTBD7Q9P203 1132 aa10.57□□□□□ -0.72
LIG3-216ENST00000593099 SERPING1P05155 500 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 OR1G1P47890 313 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 CRHR2Q13324 411 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 TUBB2AQ13885 445 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 WDR72Q3MJ13 1102 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 ABRAQ8N0Z2 381 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 MSL3Q8N5Y2 521 aaKnown RBP10.56□□□□□ -0.72
LIG3-216ENST00000593099 DNAJB3Q8WWF6 145 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 DEFB118Q96PH6 123 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 TUBB2BQ9BVA1 445 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 KIFC3Q9BVG8 833 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 INTS2Q9H0H0 1204 aaKnown RBP10.56□□□□□ -0.72
LIG3-216ENST00000593099 A0A087WZ62 844 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 EXTL3O43909 919 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 NPTX2P47972 431 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 PTGISQ16647 500 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 ARMCX6Q7L4S7 300 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 OSMRQ99650 979 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 BPIFA3Q9BQP9 254 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 FDXACB1Q9BRP7 624 aaPredicted RBP10.56□□□□□ -0.72
LIG3-216ENST00000593099 SLC45A1Q9Y2W3 748 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 TTLL3Q9Y4R7 772 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 OGTO15294 1046 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 ATP2A2P16615 1042 aaKnown RBP10.56□□□□□ -0.72
LIG3-216ENST00000593099 KCNA4P22459 653 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 GUCY2CP25092 1073 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 RARRES1P49788 294 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 KRT17Q04695 432 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 SEPT6Q14141 434 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 TMEM169Q96HH4 297 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 ZMAT2Q96NC0 199 aaKnown RBP10.56□□□□□ -0.72
LIG3-216ENST00000593099 FEZ2Q9UHY8 353 aaPredicted RBP10.56□□□□□ -0.72
LIG3-216ENST00000593099 RIPK3Q9Y572 518 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 SNX9Q9Y5X1 595 aa10.56□□□□□ -0.72
LIG3-216ENST00000593099 AOC2O75106 756 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 MAP2K2P36507 400 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 HSD17B4P51659 736 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 KIF11P52732 1056 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 EARS2Q5JPH6 523 aaKnown RBP10.55□□□□□ -0.72
LIG3-216ENST00000593099 DEFB128Q7Z7B8 93 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 CDR2LQ86X02 465 aaPredicted RBP10.55□□□□□ -0.72
LIG3-216ENST00000593099 VSTM4Q8IW00 320 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 DESI2Q9BSY9 194 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 MKNK1Q9BUB5 465 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 CEP72Q9P209 647 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 TXNDC16Q9P2K2 825 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 ZNF112Q9UJU3 913 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 NFASCO94856 1347 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 SPATA31C2B4DYI2 1134 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 ALDH7A1P49419 539 aaKnown RBP10.55□□□□□ -0.72
LIG3-216ENST00000593099 HTATIP2Q9BUP3 242 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 COLEC11Q9BWP8 271 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 UBQLN1Q9UMX0 589 aaKnown RBP10.55□□□□□ -0.72
LIG3-216ENST00000593099 TOM1L1O75674 476 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 GNRH1P01148 92 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 CDC25BP30305 580 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 LAMTOR4Q0VGL1 99 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 MESDQ14696 234 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 DUSP28Q4G0W2 176 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 APPL2Q8NEU8 664 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 PRG3Q9Y2Y8 225 aaPredicted RBP10.55□□□□□ -0.72
LIG3-216ENST00000593099 FAM169AQ9Y6X4 670 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 NRCAMQ92823 1304 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 RSPH10B2B2RC85 870 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 SLITRK3O94933 977 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 RSPH10BP0C881 870 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 TERF1P54274 439 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 NCOA4Q13772 614 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 CD302Q8IX05 232 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 IL31RAQ8NI17 732 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 HAUS1Q96CS2 278 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 ARFGEF2Q9Y6D5 1785 aa10.55□□□□□ -0.72
LIG3-216ENST00000593099 DPYSL4O14531 572 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 CYP27A1Q02318 531 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 ST3GAL1Q11201 340 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 SGSM1Q2NKQ1 1148 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 TOGARAM2Q6ZUX3 1019 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 MAATS1Q7Z4T9 603 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 SH3TC2Q8TF17 1288 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 YME1L1Q96TA2 773 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 RBPJLQ9UBG7 517 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 CNTNAP1P78357 1384 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 CYP3A7-CYP3A51PA0A087WV96 503 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 GPR25O00155 361 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 FOXP2O15409 715 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 BUB1O43683 1085 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 SLU7O95391 586 aaKnown RBP10.54□□□□□ -0.72
LIG3-216ENST00000593099 GHRP10912 638 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 CYP3A7P24462 503 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 EIF4A3P38919 411 aaKnown RBP10.54□□□□□ -0.72
LIG3-216ENST00000593099 SV2CQ496J9 727 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 C10orf76Q5T2E6 689 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 MPZL3Q6UWV2 235 aa10.54□□□□□ -0.72
LIG3-216ENST00000593099 ELOA2Q8IYF1 753 aaPredicted RBP10.54□□□□□ -0.72
LIG3-216ENST00000593099 RPUSD2Q8IZ73 545 aaKnown RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms