RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 MFAP3LO75121 409 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 CABYRO75952 493 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 STBD1O95210 358 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 C22orf31O95567 290 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 CCDC172P0C7W6 258 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 SRGAP2CP0DJJ0 459 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 SMIM10L2AP0DMW4 78 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 SMIM10L2BP0DMW5 78 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 CYP2C9P11712 490 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 SKILP12757 684 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 HOXD8P13378 290 aaPredicted RBP6.74□□□□□ -1.33
LIG3-206ENST00000586058 ATP4AP20648 1035 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 GLRA2P23416 452 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 KLRC1P26715 233 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 ARL2P36404 184 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 CLCN3P51790 818 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 GJA9P57773 515 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 FOXK1P85037 733 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 POU5F1BQ06416 359 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 ENPEPQ07075 957 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 LAMTOR4Q0VGL1 99 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 KCNH2Q12809 1159 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 PRPF4BQ13523 1007 aaKnown RBP6.74□□□□□ -1.33
LIG3-206ENST00000586058 NOLC1Q14978 699 aaKnown RBP eCLIP6.74□□□□□ -1.33
LIG3-206ENST00000586058 PCBP1Q15365 356 aaKnown RBP eCLIP6.74□□□□□ -1.33
LIG3-206ENST00000586058 SYCP1Q15431 976 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 SNRNP35Q16560 246 aaKnown RBP6.74□□□□□ -1.33
LIG3-206ENST00000586058 KYAT1Q16773 422 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 EXOC3L4Q17RC7 722 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 ZNF568Q3ZCX4 644 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 FAM47CQ5HY64 1035 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 FIGNQ5HY92 759 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 GNASQ5JWF2 1037 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 PRAMEF19Q5SWL8 479 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 CDCA2Q69YH5 1023 aaPredicted RBP6.74□□□□□ -1.33
LIG3-206ENST00000586058 NFRKBQ6P4R8 1299 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 MTHFD1LQ6UB35 978 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 CYP26C1Q6V0L0 522 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 ZPBP2Q6X784 338 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 VPS36Q86VN1 386 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 TRIM59Q8IWR1 403 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 ASAP3Q8TDY4 903 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 PXYLP1Q8TE99 480 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 CPLX3Q8WVH0 158 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 PRPF31Q8WWY3 499 aaKnown RBP6.74□□□□□ -1.33
LIG3-206ENST00000586058 BSNDQ8WZ55 320 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 VTI1AQ96AJ9 217 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 EEF2KMTQ96G04 330 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 FAM81BQ96LP2 452 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 SPAG5Q96R06 1193 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 PANX2Q96RD6 677 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 MED15Q96RN5 788 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 ERGIC2Q96RQ1 377 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 ZIC5Q96T25 663 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 BAG1Q99933 345 aaPredicted RBP6.74□□□□□ -1.33
LIG3-206ENST00000586058 C16orf70Q9BSU1 422 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 MSTO1Q9BUK6 570 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 KIFC3Q9BVG8 833 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 NFKBIZQ9BYH8 718 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 ARHGAP39Q9C0H5 1083 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 DEF6Q9H4E7 631 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 PCIF1Q9H4Z3 704 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 HMX1Q9NP08 348 aaPredicted RBP6.74□□□□□ -1.33
LIG3-206ENST00000586058 PDLIM7Q9NR12 457 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 GCNT4Q9P109 453 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 CEP72Q9P209 647 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 GJD2Q9UKL4 321 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 AGO2Q9UKV8 859 aaKnown RBP6.74□□□□□ -1.33
LIG3-206ENST00000586058 GABRQQ9UN88 632 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 NOD1Q9Y239 953 aa6.74□□□□□ -1.33
LIG3-206ENST00000586058 IGKV6-21A0A0C4DH24 114 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 SMIM35A0A1B0GVV1 85 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 GTPBP10A4D1E9 387 aaKnown RBP6.73□□□□□ -1.33
LIG3-206ENST00000586058 ZNF233A6NK53 670 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 KBTBD13C9JR72 458 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 P4HA2O15460 535 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 TEX33O43247 280 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 TGFB1I1O43294 461 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 OFD1O75665 1012 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 TOM1L1O75674 476 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 AKAP3O75969 853 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 PIGRP01833 764 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 HARSP12081 509 aaKnown RBP6.73□□□□□ -1.33
LIG3-206ENST00000586058 CASP14P31944 242 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 KRT9P35527 623 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 CYLC1P35663 651 aaPredicted RBP6.73□□□□□ -1.33
LIG3-206ENST00000586058 MXI1P50539 228 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 VAMP7P51809 220 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 SOX10P56693 466 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 ZBED6P86452 979 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 KCNA1Q09470 495 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 TDRD12Q587J7 1177 aaKnown RBP6.73□□□□□ -1.33
LIG3-206ENST00000586058 MIIPQ5JXC2 388 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 TAF2Q6P1X5 1199 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 SRGAP1Q7Z6B7 1085 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 TMTC1Q8IUR5 882 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 KSR1Q8IVT5 923 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 PLPP6Q8IY26 295 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 RDH13Q8NBN7 331 aa6.73□□□□□ -1.33
LIG3-206ENST00000586058 TMEM174Q8WUU8 243 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms