RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.14■□□□□ 0.33
SF3B3-215ENST00000577085 ARL5CA6NH57 179 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 NPTXRO95502 500 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 MLH1P40692 756 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 SLC11A1P49279 550 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 COASYQ13057 564 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 GIT2Q14161 759 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 CDCA2Q69YH5 1023 aaPredicted RBP17.14■□□□□ 0.33
SF3B3-215ENST00000577085 DDX53Q86TM3 631 aaKnown RBP17.14■□□□□ 0.33
SF3B3-215ENST00000577085 ZNF280BQ86YH2 543 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 MRPL43Q8N983 215 aaKnown RBP17.14■□□□□ 0.33
SF3B3-215ENST00000577085 MSLNLQ96KJ4 702 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 ADPGKQ9BRR6 497 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 TMEM175Q9BSA9 504 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 NXF3Q9H4D5 531 aaKnown RBP17.14■□□□□ 0.33
SF3B3-215ENST00000577085 CLEC1BQ9P126 229 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 PARP2Q9UGN5 583 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 HES2Q9Y543 173 aa17.14■□□□□ 0.33
SF3B3-215ENST00000577085 A0A1B0GUA9 196 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 VPS37CA5D8V6 355 aaPredicted RBP17.13■□□□□ 0.33
SF3B3-215ENST00000577085 VWA3AA6NCI4 1184 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 PP2D1A8MPX8 630 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 N4BP3O15049 544 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 GLP2RO95838 553 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 PDCP20941 246 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 OR1G1P47890 313 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 EFNA5P52803 228 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 ATP2C1P98194 919 aaPredicted RBP17.13■□□□□ 0.33
SF3B3-215ENST00000577085 ECM1Q16610 540 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 AMHR2Q16671 573 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 PPP4R3CPQ6ZMV5 832 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 CDR2LQ86X02 465 aaPredicted RBP17.13■□□□□ 0.33
SF3B3-215ENST00000577085 SMRP1Q8NCR6 262 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 RPS6KC1Q96S38 1066 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 GAD1Q99259 594 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 GIT1Q9Y2X7 761 aa17.13■□□□□ 0.33
SF3B3-215ENST00000577085 C2orf71A6NGG8 1288 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 CCDC169A6NNP5 214 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 E9PMD0 336 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 DDHD2O94830 711 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 EYA4O95677 639 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 SSBP05455 408 aaKnown RBP eCLIP17.12■□□□□ 0.33
SF3B3-215ENST00000577085 PRKCBP05771 671 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 AKAP5P24588 427 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 CDC25AP30304 524 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 AFF1P51825 1210 aaKnown RBP17.12■□□□□ 0.33
SF3B3-215ENST00000577085 RBM10P98175 930 aaKnown RBP17.12■□□□□ 0.33
SF3B3-215ENST00000577085 ZP2Q05996 745 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 BRAPQ7Z569 592 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 APBB1IPQ7Z5R6 666 aaPredicted RBP17.12■□□□□ 0.33
SF3B3-215ENST00000577085 TMEM173Q86WV6 379 aaPredicted RBP17.12■□□□□ 0.33
SF3B3-215ENST00000577085 BSNDQ8WZ55 320 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 CASP10Q92851 521 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 DRC1Q96MC2 740 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 NT5C3AQ9H0P0 336 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 RNF39Q9H2S5 420 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 CD320Q9NPF0 282 aa17.12■□□□□ 0.33
SF3B3-215ENST00000577085 MYO7AQ13402 2215 aa17.11■□□□□ 0.33
SF3B3-215ENST00000577085 SPDYE4A6NLX3 237 aa17.11■□□□□ 0.33
SF3B3-215ENST00000577085 NRP1O14786 923 aa17.11■□□□□ 0.33
SF3B3-215ENST00000577085 ALADP13716 330 aa17.11■□□□□ 0.33
SF3B3-215ENST00000577085 SCNN1GP51170 649 aa17.11■□□□□ 0.33
SF3B3-215ENST00000577085 DMP1Q13316 513 aaPredicted RBP17.11■□□□□ 0.33
SF3B3-215ENST00000577085 IL17AQ16552 155 aa17.11■□□□□ 0.33
SF3B3-215ENST00000577085 FAM187BQ17R55 369 aa17.11■□□□□ 0.33
SF3B3-215ENST00000577085 ARL6IP4Q66PJ3 421 aaKnown RBP17.11■□□□□ 0.33
SF3B3-215ENST00000577085 RASSF8Q8NHQ8 419 aa17.11■□□□□ 0.33
SF3B3-215ENST00000577085 ZFP42Q96MM3 310 aa17.11■□□□□ 0.33
SF3B3-215ENST00000577085 ZBP1Q9H171 429 aa17.11■□□□□ 0.33
SF3B3-215ENST00000577085 FZD8Q9H461 694 aa17.11■□□□□ 0.33
SF3B3-215ENST00000577085 POLD4Q9HCU8 107 aa17.11■□□□□ 0.33
SF3B3-215ENST00000577085 PRG3Q9Y2Y8 225 aaPredicted RBP17.11■□□□□ 0.33
SF3B3-215ENST00000577085 USP15Q9Y4E8 981 aaPredicted RBP17.11■□□□□ 0.33
SF3B3-215ENST00000577085 TTC28Q96AY4 2481 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 K7ERI5 159 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 ACKR2O00590 384 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 BMP15O95972 392 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 CTSAP10619 480 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 HOXB8P17481 243 aaPredicted RBP17.1■□□□□ 0.33
SF3B3-215ENST00000577085 TPRNQ4KMQ1 711 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 ANKRD54Q6NXT1 300 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 TMEM184AQ6ZMB5 413 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 VN1R2Q8NFZ6 395 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 AUTS2Q8WXX7 1259 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 KIFC3Q9BVG8 833 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 APOL5Q9BWW9 433 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 EMILIN2Q9BXX0 1053 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 BACH2Q9BYV9 841 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 EPHX3Q9H6B9 360 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 MRPL17Q9NRX2 175 aaKnown RBP17.1■□□□□ 0.33
SF3B3-215ENST00000577085 KLK14Q9P0G3 267 aa17.1■□□□□ 0.33
SF3B3-215ENST00000577085 BRWD1Q9NSI6 2320 aa17.09■□□□□ 0.33
SF3B3-215ENST00000577085 CLASP2O75122 1294 aaKnown RBP17.09■□□□□ 0.33
SF3B3-215ENST00000577085 HIP1RO75146 1068 aa17.09■□□□□ 0.33
SF3B3-215ENST00000577085 URODP06132 367 aa17.09■□□□□ 0.33
SF3B3-215ENST00000577085 UBA7P41226 1012 aa17.09■□□□□ 0.33
SF3B3-215ENST00000577085 PEX3P56589 373 aa17.09■□□□□ 0.33
SF3B3-215ENST00000577085 GRIK3Q13003 919 aa17.09■□□□□ 0.33
SF3B3-215ENST00000577085 KIAA1841Q6NSI8 718 aa17.09■□□□□ 0.33
SF3B3-215ENST00000577085 CES5AQ6NT32 575 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms