RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 HSPA9P38646 679 aaKnown RBP10.89□□□□□ -0.67
VPS53-220ENST00000576149 GMPSP49915 693 aaPredicted RBP10.89□□□□□ -0.67
VPS53-220ENST00000576149 DMP1Q13316 513 aaPredicted RBP10.89□□□□□ -0.67
VPS53-220ENST00000576149 TBC1D10BQ4KMP7 808 aaPredicted RBP10.89□□□□□ -0.67
VPS53-220ENST00000576149 DCAF12L1Q5VU92 463 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 CD302Q8IX05 232 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 FAM71AQ8IYT1 594 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 SPIRE2Q8WWL2 714 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 CARD9Q9H257 536 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 ZNF112Q9UJU3 913 aa10.89□□□□□ -0.67
VPS53-220ENST00000576149 DENND3A2RUS2 1198 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 ZNF233A6NK53 670 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 STBD1O95210 358 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 POU5F1Q01860 360 aaKnown RBP10.88□□□□□ -0.67
VPS53-220ENST00000576149 SF3B2Q13435 895 aaKnown RBP10.88□□□□□ -0.67
VPS53-220ENST00000576149 HLTFQ14527 1009 aaKnown RBP eCLIP10.88□□□□□ -0.67
VPS53-220ENST00000576149 DCAF15Q66K64 600 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 OTUD6AQ7L8S5 288 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 MAATS1Q7Z4T9 603 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 RPUSD2Q8IZ73 545 aaKnown RBP10.88□□□□□ -0.67
VPS53-220ENST00000576149 ZNF280CQ8ND82 737 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 CCDC26Q8TAB7 109 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 PARD3BQ8TEW8 1205 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 KIFAP3Q92845 792 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 KAT5Q92993 513 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 KREMEN1Q96MU8 473 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 KIFC3Q9BVG8 833 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 C17orf75Q9HAS0 396 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 AS3MTQ9HBK9 375 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 KMT5AQ9NQR1 393 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 GABBR1Q9UBS5 961 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 AMACRQ9UHK6 382 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 CNOT7Q9UIV1 285 aaKnown RBP10.88□□□□□ -0.67
VPS53-220ENST00000576149 ADAMTS5Q9UNA0 930 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 COQ4Q9Y3A0 265 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 PFASO15067 1338 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 ZNF862O60290 1169 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 RTN2O75298 545 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 KRT14P02533 472 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 FGGP02679 453 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 KCNA2P16389 499 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 CHRNB2P17787 502 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 PTPRAP18433 802 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 OAZ1P54368 228 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 GPC5P78333 572 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 MAP2K1Q02750 393 aaPredicted RBP10.88□□□□□ -0.67
VPS53-220ENST00000576149 KRT39Q6A163 491 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 SNRNP48Q6IEG0 339 aaKnown RBP10.88□□□□□ -0.67
VPS53-220ENST00000576149 EPS8L1Q8TE68 723 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 BSNDQ8WZ55 320 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 SEC14L1Q92503 715 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 SEMA4DQ92854 862 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 SAAL1Q96ER3 474 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 C12orf42Q96LP6 360 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 FBXL18Q96ME1 805 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 PCDHB18PQ96TA0 734 aa10.88□□□□□ -0.67
VPS53-220ENST00000576149 NOCTQ9UK39 431 aaKnown RBP10.88□□□□□ -0.67
VPS53-220ENST00000576149 DKC1O60832 514 aaKnown RBP eCLIP10.87□□□□□ -0.673e-11■■■□□ 15.6
VPS53-220ENST00000576149 RGS20O76081 388 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 SGPL1O95470 568 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 GZMAP12544 262 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 DSG3P32926 999 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 GPC3P51654 580 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 C11orf63Q6NUN7 778 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 SLC39A4Q6P5W5 647 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 NOP9Q86U38 636 aaKnown RBP10.87□□□□□ -0.67
VPS53-220ENST00000576149 DDX42Q86XP3 938 aaKnown RBP eCLIP10.87□□□□□ -0.67
VPS53-220ENST00000576149 PROCA1Q8NCQ7 364 aaPredicted RBP10.87□□□□□ -0.67
VPS53-220ENST00000576149 C1orf131Q8NDD1 294 aaKnown RBP10.87□□□□□ -0.67
VPS53-220ENST00000576149 TMC2Q8TDI7 906 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 NSUN6Q8TEA1 469 aaKnown RBP10.87□□□□□ -0.67
VPS53-220ENST00000576149 SHC3Q92529 594 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 ATP6V0A1Q93050 837 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 ZKSCAN4Q969J2 545 aaPredicted RBP10.87□□□□□ -0.67
VPS53-220ENST00000576149 CCDC127Q96BQ5 260 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 CEP170P1Q96L14 293 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 RNPC3Q96LT9 517 aaKnown RBP10.87□□□□□ -0.67
VPS53-220ENST00000576149 MFSD14AQ96MC6 490 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 TMEM8AQ9HCN3 771 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 PDLIM7Q9NR12 457 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 CTTNBP2NLQ9P2B4 639 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 ZNF214Q9UL59 606 aaPredicted RBP10.87□□□□□ -0.67
VPS53-220ENST00000576149 ALG6Q9Y672 507 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 PARP14Q460N5 1801 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 FAM170AA1A519 330 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 TTI1O43156 1089 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 USP8P40818 1118 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 IRAK1P51617 712 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 MFAP3P55082 362 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 PTENP60484 403 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 SKOR1P84550 965 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 FOXR1Q6PIV2 292 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 PPM1KQ8N3J5 372 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 HELQQ8TDG4 1101 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 WRNIP1Q96S55 665 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 NAP1L3Q99457 506 aaPredicted RBP10.87□□□□□ -0.67
VPS53-220ENST00000576149 CAPS2Q9BXY5 557 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 NEUROG2Q9H2A3 272 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 PICK1Q9NRD5 415 aa10.87□□□□□ -0.67
VPS53-220ENST00000576149 NR2E1Q9Y466 385 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms