RNA–Protein interactions for RNA: ENST00000575513.1

CIITA-210, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 516 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-210ENST00000575513 FOXD4L5Q5VV16 416 aaPredicted RBP14.95□□□□□ -0.02
CIITA-210ENST00000575513 PDE12Q6L8Q7 609 aaKnown RBP14.95□□□□□ -0.02
CIITA-210ENST00000575513 KCNT2Q6UVM3 1135 aa14.95□□□□□ -0.02
CIITA-210ENST00000575513 SLC17A8Q8NDX2 589 aa14.95□□□□□ -0.02
CIITA-210ENST00000575513 FOXD4L4Q8WXT5 416 aaPredicted RBP14.95□□□□□ -0.02
CIITA-210ENST00000575513 ZNF558Q96NG5 402 aa14.95□□□□□ -0.02
CIITA-210ENST00000575513 ADPGKQ9BRR6 497 aa14.95□□□□□ -0.02
CIITA-210ENST00000575513 PDZD7Q9H5P4 517 aa14.95□□□□□ -0.02
CIITA-210ENST00000575513 TBC1D13Q9NVG8 400 aa14.95□□□□□ -0.02
CIITA-210ENST00000575513 RCOR1Q9UKL0 485 aa14.95□□□□□ -0.02
CIITA-210ENST00000575513 COG5Q9UP83 839 aa14.95□□□□□ -0.02
CIITA-210ENST00000575513 TNFSF13BQ9Y275 285 aa14.95□□□□□ -0.02
CIITA-210ENST00000575513 ZDHHC9Q9Y397 364 aa14.95□□□□□ -0.02
CIITA-210ENST00000575513 EYSQ5T1H1 3165 aa14.95□□□□□ -0.02
CIITA-210ENST00000575513 RALGAPA2Q2PPJ7 1873 aa14.95□□□□□ -0.02
CIITA-210ENST00000575513 MEIS3P2A8K0S8 358 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 NCK2O43639 380 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 FGF18O76093 207 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 KRT17Q04695 432 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 RAD51AP2Q09MP3 1159 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 CAMK1Q14012 370 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 GIT2Q14161 759 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 DCAF4L1Q3SXM0 396 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 AXDND1Q5T1B0 1012 aaPredicted RBP14.94□□□□□ -0.02
CIITA-210ENST00000575513 NT5DC1Q5TFE4 455 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 ATF7IP2Q5U623 682 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 SV2BQ7L1I2 683 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 THNSL1Q8IYQ7 743 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 TMEM161BQ8NDZ6 487 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 PPM1EQ8WY54 764 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 REEP2Q9BRK0 252 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 KIFC3Q9BVG8 833 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 MRPL4Q9BYD3 311 aaKnown RBP14.94□□□□□ -0.02
CIITA-210ENST00000575513 RNF39Q9H2S5 420 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 CUEDC2Q9H467 287 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 NSUN3Q9H649 340 aaKnown RBP14.94□□□□□ -0.02
CIITA-210ENST00000575513 PARVGQ9HBI0 331 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 ALG13Q9NP73 1137 aaKnown RBP14.94□□□□□ -0.02
CIITA-210ENST00000575513 SPG21Q9NZD8 308 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 STK39Q9UEW8 545 aa14.94□□□□□ -0.02
CIITA-210ENST00000575513 PUF60Q9UHX1 559 aaKnown RBP14.94□□□□□ -0.02
CIITA-210ENST00000575513 FNDC1Q4ZHG4 1894 aaPredicted RBP14.94□□□□□ -0.02
CIITA-210ENST00000575513 PRUNE2Q8WUY3 3088 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 ARL5CA6NH57 179 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 TTLL13PA6NNM8 815 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 SLC16A4O15374 487 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 NPTXRO95502 500 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 KRT18P05783 430 aaKnown RBP14.93□□□□□ -0.02
CIITA-210ENST00000575513 MAPTP10636 758 aaKnown RBP14.93□□□□□ -0.02
CIITA-210ENST00000575513 NCKAP1LP55160 1127 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 BCAR1P56945 870 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 NUCB2P80303 420 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 DNM1Q05193 864 aaKnown RBP14.93□□□□□ -0.02
CIITA-210ENST00000575513 RNASELQ05823 741 aaKnown RBP14.93□□□□□ -0.02
CIITA-210ENST00000575513 STRN3Q13033 797 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 TMEM132AQ24JP5 1023 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 LONRF3Q496Y0 759 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 TAS1R3Q7RTX0 852 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.93□□□□□ -0.02
CIITA-210ENST00000575513 MICALL1Q8N3F8 863 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 POF1BQ8WVV4 589 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 ATXN2LQ8WWM7 1075 aaKnown RBP14.93□□□□□ -0.02
CIITA-210ENST00000575513 MRPS27Q92552 414 aaKnown RBP14.93□□□□□ -0.02
CIITA-210ENST00000575513 PPP2R3CQ969Q6 453 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 ACO2Q99798 780 aaKnown RBP14.93□□□□□ -0.02
CIITA-210ENST00000575513 TMEM175Q9BSA9 504 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 PTPRHQ9HD43 1115 aa14.93□□□□□ -0.02
CIITA-210ENST00000575513 NPHP3-ACAD11A0A0J9YXS1 232 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 FAM13AO94988 1023 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 ALDH2P05091 517 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 EDN1P05305 212 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 GALTP07902 379 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 STAT6P42226 847 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 DHX8Q14562 1220 aaKnown RBP14.92□□□□□ -0.02
CIITA-210ENST00000575513 COL19A1Q14993 1142 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 ZPBP2Q6X784 338 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 SLC39A11Q8N1S5 342 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 MYCT1Q8N699 235 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 FAM193BQ96PV7 902 aaPredicted RBP14.92□□□□□ -0.02
CIITA-210ENST00000575513 LRRC27Q9C0I9 530 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 NXF3Q9H4D5 531 aaKnown RBP14.92□□□□□ -0.02
CIITA-210ENST00000575513 ST6GALNAC4Q9H4F1 302 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 NRDE2Q9H7Z3 1164 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 HCSTQ9UBK5 93 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 PCDHA7Q9UN72 937 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 INPP5FQ9Y2H2 1132 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 HES2Q9Y543 173 aa14.92□□□□□ -0.02
CIITA-210ENST00000575513 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.91□□□□□ -0.02
CIITA-210ENST00000575513 TRAK2O60296 914 aa14.91□□□□□ -0.02
CIITA-210ENST00000575513 TBCAO75347 108 aaKnown RBP14.91□□□□□ -0.02
CIITA-210ENST00000575513 LIG1P18858 919 aa14.91□□□□□ -0.02
CIITA-210ENST00000575513 PROZP22891 400 aa14.91□□□□□ -0.02
CIITA-210ENST00000575513 DNAJB1P25685 340 aa14.91□□□□□ -0.02
CIITA-210ENST00000575513 ME1P48163 572 aa14.91□□□□□ -0.02
CIITA-210ENST00000575513 KRT85P78386 507 aa14.91□□□□□ -0.02
CIITA-210ENST00000575513 DSC1Q08554 894 aa14.91□□□□□ -0.02
CIITA-210ENST00000575513 AAK1Q2M2I8 961 aa14.91□□□□□ -0.02
CIITA-210ENST00000575513 FOXD4L6Q3SYB3 417 aaPredicted RBP14.91□□□□□ -0.02
CIITA-210ENST00000575513 SHC4Q6S5L8 630 aa14.91□□□□□ -0.02
CIITA-210ENST00000575513 FOXD4L3Q6VB84 417 aaPredicted RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms