RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 KIF22Q14807 665 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 LONRF1Q17RB8 773 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 PADI6Q6TGC4 694 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 C1orf54Q8WWF1 131 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 DMAC2Q9NW81 257 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 SAMD15Q9P1V8 674 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 BAIAP2L1Q9UHR4 511 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 C5orf60A6NFR6 353 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 CALCAP01258 141 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 DLATP10515 647 aaKnown RBP18.39■□□□□ 0.53
VPS53-215ENST00000573028 PLCB4Q15147 1175 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 PNMA8AQ86V59 439 aaPredicted RBP18.39■□□□□ 0.53
VPS53-215ENST00000573028 TCP11Q8WWU5 503 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 CCT6BQ92526 530 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 TBC1D31Q96DN5 1066 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 YY1AP1Q9H869 796 aa18.39■□□□□ 0.53
VPS53-215ENST00000573028 TATDN1Q6P1N9 297 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 ARMC9Q7Z3E5 817 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 SLC47A2Q86VL8 602 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 C3orf20Q8ND61 904 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 GMCL1P1Q8NEA9 526 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 SGSM3Q96HU1 749 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 TPX2Q9ULW0 747 aaKnown RBP18.38■□□□□ 0.53
VPS53-215ENST00000573028 TRPC6Q9Y210 931 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 ZNF831Q5JPB2 1677 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 IPO5O00410 1097 aaKnown RBP18.38■□□□□ 0.53
VPS53-215ENST00000573028 CYP3A4P08684 503 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 NUDT17P0C025 328 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 SLC15A2Q16348 729 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 DAW1Q8N136 415 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 ANKRD42Q8N9B4 389 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 GIMAP7Q8NHV1 300 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 LMO3Q8TAP4 145 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 ZNF653Q96CK0 615 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 DDX23Q9BUQ8 820 aaKnown RBP18.38■□□□□ 0.53
VPS53-215ENST00000573028 NUP85Q9BW27 656 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 ADAM7Q9H2U9 754 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 SEL1LQ9UBV2 794 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 CCT8L1PA6NM43 557 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 MIF4GDA9UHW6 222 aaKnown RBP18.38■□□□□ 0.53
VPS53-215ENST00000573028 CLTAP09496 248 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 NOP9Q86U38 636 aaKnown RBP18.38■□□□□ 0.53
VPS53-215ENST00000573028 MTUS1Q9ULD2 1270 aa18.38■□□□□ 0.53
VPS53-215ENST00000573028 TCP10L2B9ZVM9 353 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 CLDN3O15551 220 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 CALCOCO2Q13137 446 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 ZNF564Q8TBZ8 553 aaPredicted RBP18.37■□□□□ 0.53
VPS53-215ENST00000573028 SLC5A5Q92911 643 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 TEKT3Q9BXF9 490 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 TAOK3Q9H2K8 898 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 KCNK9Q9NPC2 374 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 FBXO28Q9NVF7 368 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 ASIC3Q9UHC3 531 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 RARAP10276 462 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 MMP13P45452 471 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 MMP14P50281 582 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 PPP2R5CQ13362 524 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 C6orf118Q5T5N4 469 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 TBC1D1Q86TI0 1168 aaPredicted RBP18.37■□□□□ 0.53
VPS53-215ENST00000573028 ATXN2LQ8WWM7 1075 aaKnown RBP18.37■□□□□ 0.53
VPS53-215ENST00000573028 PGM2Q96G03 612 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 FAM84AQ96KN4 292 aa18.37■□□□□ 0.53
VPS53-215ENST00000573028 ZNF317Q96PQ6 595 aaPredicted RBP18.37■□□□□ 0.53
VPS53-215ENST00000573028 MXI1P50539 228 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 EPC2Q52LR7 807 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 GPRC5CQ9NQ84 441 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 LARSQ9P2J5 1176 aaKnown RBP18.36■□□□□ 0.53
VPS53-215ENST00000573028 CLRN2A0PK11 232 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 PODXLO00592 558 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 RIPK2O43353 540 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 CREB1P16220 341 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 COILP38432 576 aaPredicted RBP18.36■□□□□ 0.53
VPS53-215ENST00000573028 ADCY2Q08462 1091 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 INTS8Q75QN2 995 aaKnown RBP18.36■□□□□ 0.53
VPS53-215ENST00000573028 MIER3Q7Z3K6 550 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 ATG4AQ8WYN0 398 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 SAAL1Q96ER3 474 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.36■□□□□ 0.53
VPS53-215ENST00000573028 ODF2LQ9ULJ1 636 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 FOCADQ5VW36 1801 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 RTN2O75298 545 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 ZNF131P52739 623 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 C2CD6Q53TS8 623 aa18.36■□□□□ 0.53
VPS53-215ENST00000573028 SLC13A5Q86YT5 568 aaPredicted RBP18.36■□□□□ 0.53
VPS53-215ENST00000573028 SLC16A4O15374 487 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 ZKSCAN8Q15776 578 aaPredicted RBP18.35■□□□□ 0.53
VPS53-215ENST00000573028 FMNL3Q8IVF7 1028 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 PLEKHO2Q8TD55 490 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 EPS8L1Q8TE68 723 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 FAM118BQ9BPY3 351 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 WDR11Q9BZH6 1224 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 HSPBP1Q9NZL4 362 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 ATP8B3O60423 1300 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 MYH11P35749 1972 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 PEX5P50542 639 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 GRIPAP1Q4V328 841 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 C11orf63Q6NUN7 778 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 RNF207Q6ZRF8 634 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 PODNQ7Z5L7 613 aa18.35■□□□□ 0.53
VPS53-215ENST00000573028 FAM228AQ86W67 206 aa18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms