RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PEX5P50542 639 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 SPDYCQ5MJ68 293 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 NLRP14Q86W24 1093 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 ZNF473Q8WTR7 871 aaKnown RBP24.57■■□□□ 1.52
VPS53-211ENST00000571805 TAAR1Q96RJ0 339 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 RPS6KC1Q96S38 1066 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 CCT8L2Q96SF2 557 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 ZSWIM1Q9BR11 485 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 TIPINQ9BVW5 301 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 LRRC4CQ9HCJ2 640 aa24.57■■□□□ 1.52
VPS53-211ENST00000571805 PHF20L1A8MW92 1017 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 MTA2O94776 668 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 GZMAP12544 262 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 RTKN2Q8IZC4 609 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 ZBED3Q96IU2 234 aaPredicted RBP24.56■■□□□ 1.52
VPS53-211ENST00000571805 SLTMQ9NWH9 1034 aaKnown RBP eCLIP24.56■■□□□ 1.52
VPS53-211ENST00000571805 GOLGA8IPA6NC78 632 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 GOLGA8JA6NMD2 632 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 WDR46O15213 610 aaKnown RBP24.56■■□□□ 1.52
VPS53-211ENST00000571805 ADSSP30520 456 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 USP8P40818 1118 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 PTGIRP43119 386 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 JAMLQ86YT9 394 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 UBL4BQ8N7F7 174 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 MYCBPAPQ8TBZ2 947 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 SEMA4DQ92854 862 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 SLC38A10Q9HBR0 1119 aa24.56■■□□□ 1.52
VPS53-211ENST00000571805 RAVER2Q9HCJ3 691 aaKnown RBP24.56■■□□□ 1.52
VPS53-211ENST00000571805 CHORDC1Q9UHD1 332 aaPredicted RBP24.56■■□□□ 1.52
VPS53-211ENST00000571805 SYNGAP1Q96PV0 1343 aa24.55■■□□□ 1.52
VPS53-211ENST00000571805 ATP9AO75110 1047 aa24.55■■□□□ 1.52
VPS53-211ENST00000571805 DRG2P55039 364 aaKnown RBP24.55■■□□□ 1.52
VPS53-211ENST00000571805 ZDHHC14Q8IZN3 488 aa24.55■■□□□ 1.52
VPS53-211ENST00000571805 IWS1Q96ST2 819 aa24.55■■□□□ 1.52
VPS53-211ENST00000571805 ATXN2Q99700 1313 aaKnown RBP24.55■■□□□ 1.52
VPS53-211ENST00000571805 ANKRD63C9JTQ0 380 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 KIAA0391O15091 583 aaKnown RBP24.54■■□□□ 1.52
VPS53-211ENST00000571805 EIF2AK2P19525 551 aaKnown RBP24.54■■□□□ 1.52
VPS53-211ENST00000571805 COMTP21964 271 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 PGM5Q15124 567 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 SPATS2Q86XZ4 545 aaKnown RBP24.54■■□□□ 1.52
VPS53-211ENST00000571805 CBWD2Q8IUF1 395 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 PRELID2Q8N945 189 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 SHC3Q92529 594 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 CD101Q93033 1021 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 EPB41L4BQ9H329 900 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 ACP6Q9NPH0 428 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 HOMER2Q9NSB8 354 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 BCCIPQ9P287 314 aaKnown RBP eCLIP24.54■■□□□ 1.52
VPS53-211ENST00000571805 ATP8A1Q9Y2Q0 1164 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 CYP26A1O43174 497 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 PHF2O75151 1096 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 CCNE2O96020 404 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 CTNNA2P26232 953 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 PSMC5P62195 406 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 MAP2K1Q02750 393 aaPredicted RBP24.54■■□□□ 1.52
VPS53-211ENST00000571805 SLC47A2Q86VL8 602 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 TTLL6Q8N841 843 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 C18orf8Q96DM3 657 aa24.54■■□□□ 1.52
VPS53-211ENST00000571805 UTP3Q9NQZ2 479 aaKnown RBP eCLIP24.54■■□□□ 1.521e-6■■■■■ 243.8
VPS53-211ENST00000571805 MAP3K20Q9NYL2 800 aaKnown RBP24.54■■□□□ 1.52
VPS53-211ENST00000571805 NOVA2Q9UNW9 492 aaKnown RBP24.54■■□□□ 1.52
VPS53-211ENST00000571805 TMEM110-MUSTN1A8MSY1 372 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 FAM107AO95990 144 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 HSPA6P17066 643 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 RPS6P62753 249 aaKnown RBP24.53■■□□□ 1.52
VPS53-211ENST00000571805 DGKZQ13574 1117 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 RASA3Q14644 834 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 MESDQ14696 234 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 SNRNP35Q16560 246 aaKnown RBP24.53■■□□□ 1.52
VPS53-211ENST00000571805 NBPF9Q3BBW0 867 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 TTC31Q49AM3 519 aaPredicted RBP24.53■■□□□ 1.52
VPS53-211ENST00000571805 TBC1D10BQ4KMP7 808 aaPredicted RBP24.53■■□□□ 1.52
VPS53-211ENST00000571805 ZDHHC24Q6UX98 284 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 CNOT8Q9UFF9 292 aaKnown RBP24.53■■□□□ 1.52
VPS53-211ENST00000571805 DCDC2CA8MYV0 355 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 PPP2R2AP63151 447 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 FMO1Q01740 532 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 PLA2G4FQ68DD2 849 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 PPM1KQ8N3J5 372 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 TMEM161BQ8NDZ6 487 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 AGBL3Q8NEM8 1001 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 LPAR1Q92633 364 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 TBX20Q9UMR3 447 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 SNX24Q9Y343 169 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 COQ4Q9Y3A0 265 aa24.53■■□□□ 1.52
VPS53-211ENST00000571805 CHRNA3P32297 505 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 LIG3P49916 1009 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 FAM102BQ5T8I3 360 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 TRMT1LQ7Z2T5 733 aaKnown RBP24.52■■□□□ 1.52
VPS53-211ENST00000571805 MORC4Q8TE76 937 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 PARD3BQ8TEW8 1205 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 ANKEF1Q9NU02 776 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 PCYOX1Q9UHG3 505 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 TRPC6Q9Y210 931 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 TNS1Q9HBL0 1735 aaKnown RBP24.52■■□□□ 1.52
VPS53-211ENST00000571805 E7EVH7 732 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 WNT10BO00744 389 aa24.52■■□□□ 1.52
VPS53-211ENST00000571805 ATMINO43313 823 aaPredicted RBP24.52■■□□□ 1.52
VPS53-211ENST00000571805 MMEP08473 750 aa24.52■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms