RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 ACTN4O43707 911 aaKnown RBP22.68■■□□□ 1.22
VPS53-210ENST00000571456 ZNF202O95125 648 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 CD52P31358 61 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 FOXK2Q01167 660 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 FAM187BQ17R55 369 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 PPP4R3CPQ6ZMV5 832 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 FAM228AQ86W67 206 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 CCDC65Q8IXS2 484 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 TRIM9Q9C026 710 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 TMEM134Q9H6X4 195 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 AGO3Q9H9G7 860 aaKnown RBP22.68■■□□□ 1.22
VPS53-210ENST00000571456 KMT5AQ9NQR1 393 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 C1orf112Q9NSG2 853 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 DACT1Q9NYF0 836 aa22.68■■□□□ 1.22
VPS53-210ENST00000571456 MYMKA6NI61 221 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 C19orf67A6NJJ6 358 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 ERLIN2O94905 339 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 GJB5O95377 273 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 ZSCAN20P17040 1043 aaPredicted RBP22.67■■□□□ 1.22
VPS53-210ENST00000571456 NPTX2P47972 431 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 PEX3P56589 373 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 DEFB103AP81534 67 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 NFX1Q12986 1120 aaKnown RBP22.67■■□□□ 1.22
VPS53-210ENST00000571456 MAPK6Q16659 721 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 CATSPER4Q7RTX7 472 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 ELOA2Q8IYF1 753 aaPredicted RBP22.67■■□□□ 1.22
VPS53-210ENST00000571456 CNNM3Q8NE01 707 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 DNAJC19Q96DA6 116 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 CCDC51Q96ER9 411 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 PPP1R16BQ96T49 567 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 ARHGAP28Q9P2N2 729 aa22.67■■□□□ 1.22
VPS53-210ENST00000571456 PVALEFA0A1B0GWK0 134 aa22.66■■□□□ 1.22
VPS53-210ENST00000571456 FRMD3A2A2Y4 597 aa22.66■■□□□ 1.22
VPS53-210ENST00000571456 CCDC169A6NNP5 214 aa22.66■■□□□ 1.22
VPS53-210ENST00000571456 INO80B-WBP1J3KQ70 363 aa22.66■■□□□ 1.22
VPS53-210ENST00000571456 ALCAMQ13740 583 aa22.66■■□□□ 1.22
VPS53-210ENST00000571456 KRBA2Q6ZNG9 492 aa22.66■■□□□ 1.22
VPS53-210ENST00000571456 FMR1NBQ8N0W7 255 aaPredicted RBP22.66■■□□□ 1.22
VPS53-210ENST00000571456 MYCT1Q8N699 235 aa22.66■■□□□ 1.22
VPS53-210ENST00000571456 BSNDQ8WZ55 320 aa22.66■■□□□ 1.22
VPS53-210ENST00000571456 TRAIPQ9BWF2 469 aa22.66■■□□□ 1.22
VPS53-210ENST00000571456 ST6GALNAC4Q9H4F1 302 aa22.66■■□□□ 1.22
VPS53-210ENST00000571456 OLFML3Q9NRN5 406 aa22.66■■□□□ 1.22
VPS53-210ENST00000571456 SERTAD1Q9UHV2 236 aa22.66■■□□□ 1.22
VPS53-210ENST00000571456 TRAK2O60296 914 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 SKIP12755 728 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 PTPN5P54829 565 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 NCKAP1LP55160 1127 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 MBTD1Q05BQ5 628 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 RAD51AP2Q09MP3 1159 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 LONRF3Q496Y0 759 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 DYMQ7RTS9 669 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 ADHFE1Q8IWW8 467 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 PRSS33Q8NF86 280 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 ENGASEQ8NFI3 743 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 FZD8Q9H461 694 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 GOLPH3LQ9H4A5 285 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 AGPAT5Q9NUQ2 364 aa22.65■■□□□ 1.22
VPS53-210ENST00000571456 TTC3P53804 2025 aa22.64■■□□□ 1.22
VPS53-210ENST00000571456 K7ERI5 159 aa22.64■■□□□ 1.21
VPS53-210ENST00000571456 ACKR2O00590 384 aa22.64■■□□□ 1.21
VPS53-210ENST00000571456 AMHP03971 560 aa22.64■■□□□ 1.21
VPS53-210ENST00000571456 STXBP4Q6ZWJ1 553 aa22.64■■□□□ 1.21
VPS53-210ENST00000571456 APBB1IPQ7Z5R6 666 aaPredicted RBP22.64■■□□□ 1.21
VPS53-210ENST00000571456 FBXO22Q8NEZ5 403 aa22.64■■□□□ 1.21
VPS53-210ENST00000571456 RSPH1Q8WYR4 309 aa22.64■■□□□ 1.21
VPS53-210ENST00000571456 CCDC47Q96A33 483 aaKnown RBP22.64■■□□□ 1.21
VPS53-210ENST00000571456 HVCN1Q96D96 273 aa22.64■■□□□ 1.21
VPS53-210ENST00000571456 MRPL38Q96DV4 380 aaKnown RBP22.64■■□□□ 1.21
VPS53-210ENST00000571456 PAGE5Q96GU1 130 aa22.64■■□□□ 1.21
VPS53-210ENST00000571456 RGS18Q9NS28 235 aa22.64■■□□□ 1.21
VPS53-210ENST00000571456 PANK4Q9NVE7 773 aa22.64■■□□□ 1.21
VPS53-210ENST00000571456 RIF1Q5UIP0 2472 aaKnown RBP22.63■■□□□ 1.21
VPS53-210ENST00000571456 NPHP3-ACAD11A0A0J9YXS1 232 aa22.63■■□□□ 1.21
VPS53-210ENST00000571456 DENND3A2RUS2 1198 aa22.63■■□□□ 1.21
VPS53-210ENST00000571456 KINO60870 393 aaKnown RBP22.63■■□□□ 1.21
VPS53-210ENST00000571456 PRPF40AO75400 957 aaKnown RBP22.63■■□□□ 1.21
VPS53-210ENST00000571456 IDEP14735 1019 aa22.63■■□□□ 1.21
VPS53-210ENST00000571456 IRS1P35568 1242 aa22.63■■□□□ 1.21
VPS53-210ENST00000571456 RAB27AP51159 221 aa22.63■■□□□ 1.21
VPS53-210ENST00000571456 ASIC1P78348 528 aa22.63■■□□□ 1.21
VPS53-210ENST00000571456 STRN3Q13033 797 aa22.63■■□□□ 1.21
VPS53-210ENST00000571456 SNW1Q13573 536 aaKnown RBP22.63■■□□□ 1.21
VPS53-210ENST00000571456 NOTUMQ6P988 496 aa22.63■■□□□ 1.21
VPS53-210ENST00000571456 UNC13DQ70J99 1090 aa22.63■■□□□ 1.21
VPS53-210ENST00000571456 SLC24A5Q71RS6 500 aa22.63■■□□□ 1.21
VPS53-210ENST00000571456 ZNF668Q96K58 619 aaPredicted RBP22.63■■□□□ 1.21
VPS53-210ENST00000571456 CCDC113Q9H0I3 377 aa22.63■■□□□ 1.21
VPS53-210ENST00000571456 ZHX3Q9H4I2 956 aa22.63■■□□□ 1.21
VPS53-210ENST00000571456 CNTNAP2Q9UHC6 1331 aa22.62■■□□□ 1.21
VPS53-210ENST00000571456 SFI1A8K8P3 1242 aa22.62■■□□□ 1.21
VPS53-210ENST00000571456 DSC3Q14574 896 aa22.62■■□□□ 1.21
VPS53-210ENST00000571456 PTPROQ16827 1216 aa22.62■■□□□ 1.21
VPS53-210ENST00000571456 HERC4Q5GLZ8 1057 aaPredicted RBP22.62■■□□□ 1.21
VPS53-210ENST00000571456 TMEM161BQ8NDZ6 487 aa22.62■■□□□ 1.21
VPS53-210ENST00000571456 PABPC5Q96DU9 382 aaKnown RBP22.62■■□□□ 1.21
VPS53-210ENST00000571456 GTPBP4Q9BZE4 634 aaKnown RBP22.62■■□□□ 1.21
VPS53-210ENST00000571456 MINDY3Q9H8M7 445 aa22.62■■□□□ 1.21
VPS53-210ENST00000571456 ENPP3O14638 875 aa22.61■■□□□ 1.21
VPS53-210ENST00000571456 TSPAN1O60635 241 aa22.61■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms