RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 ZNF302Q9NR11 478 aa16.36■□□□□ 0.21
CIITA-204ENST00000570546 HSPBP1Q9NZL4 362 aa16.36■□□□□ 0.21
CIITA-204ENST00000570546 EPS15L1Q9UBC2 864 aa16.36■□□□□ 0.21
CIITA-204ENST00000570546 NUB1Q9Y5A7 615 aa16.36■□□□□ 0.21
CIITA-204ENST00000570546 CFAP73A6NFT4 308 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 JADE1Q6IE81 842 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 LDHDQ86WU2 507 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 LINC00116Q8NCU8 138 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 RNF146Q9NTX7 359 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 PPARGC1AQ9UBK2 798 aaKnown RBP16.35■□□□□ 0.21
CIITA-204ENST00000570546 OATP04181 439 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 YWHABP31946 246 aaKnown RBP16.35■□□□□ 0.21
CIITA-204ENST00000570546 MAPK6Q16659 721 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 ANKRD20A4Q4UJ75 823 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 ANKRD20A8PQ5CZ79 823 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 PPP6R3Q5H9R7 873 aaPredicted RBP16.35■□□□□ 0.21
CIITA-204ENST00000570546 ANKRD20A2Q5SQ80 823 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 ANKRD20A1Q5TYW2 823 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 SIX6OS1Q8N1H7 587 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 TRIM56Q9BRZ2 755 aaKnown RBP16.35■□□□□ 0.21
CIITA-204ENST00000570546 DDX56Q9NY93 547 aaKnown RBP16.35■□□□□ 0.21
CIITA-204ENST00000570546 DYNC1LI1Q9Y6G9 523 aaKnown RBP16.35■□□□□ 0.21
CIITA-204ENST00000570546 KRT3P12035 628 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 KLRC1P26715 233 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 STX1BP61266 288 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 ILDR1Q86SU0 546 aaPredicted RBP16.35■□□□□ 0.21
CIITA-204ENST00000570546 PXDNQ92626 1479 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 SPECC1L-ADORA2AF8WAN1 911 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 H0Y3Z8 333 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 CHN1P15882 459 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 COG7P83436 770 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 AGBL2Q5U5Z8 902 aa16.35■□□□□ 0.21
CIITA-204ENST00000570546 SPAG7O75391 227 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 CDKAL1Q5VV42 579 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 PRPF38AQ8NAV1 312 aaKnown RBP16.34■□□□□ 0.21
CIITA-204ENST00000570546 FAM167AQ96KS9 214 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 SPATA31D1Q6ZQQ2 1576 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 ESYT2A0FGR8 921 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 PFDN6O15212 129 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 SLC1A1P43005 524 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 THOC5Q13769 683 aaKnown RBP16.34■□□□□ 0.21
CIITA-204ENST00000570546 SPOPLQ6IQ16 392 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 ISCUQ9H1K1 167 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 KRT38O76015 456 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 SCP2P22307 547 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 IRAK1P51617 712 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 KLHDC7AQ5VTJ3 777 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 AP1ARQ63HQ0 302 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 WDR93Q6P2C0 686 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 BZW1Q7L1Q6 419 aaKnown RBP16.34■□□□□ 0.21
CIITA-204ENST00000570546 RAB44Q7Z6P3 723 aaPredicted RBP16.34■□□□□ 0.21
CIITA-204ENST00000570546 PARVAQ9NVD7 372 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 NYAP2Q9P242 653 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 HERC5Q9UII4 1024 aaKnown RBP16.34■□□□□ 0.21
CIITA-204ENST00000570546 MEGF6O75095 1541 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 SSTR3P32745 418 aaPredicted RBP16.34■□□□□ 0.21
CIITA-204ENST00000570546 GRB10Q13322 594 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 ITPK1Q13572 414 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 HSP90AA5PQ58FG0 334 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 SYDE1Q6ZW31 735 aaPredicted RBP16.34■□□□□ 0.21
CIITA-204ENST00000570546 MARCH10Q8NA82 808 aaPredicted RBP16.34■□□□□ 0.21
CIITA-204ENST00000570546 MID2Q9UJV3 735 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 NWD1Q149M9 1564 aa16.34■□□□□ 0.21
CIITA-204ENST00000570546 HAUS5O94927 633 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 LSP1P33241 339 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 MKRN3Q13064 507 aaKnown RBP16.33■□□□□ 0.21
CIITA-204ENST00000570546 ZNF568Q3ZCX4 644 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 RC3H1Q5TC82 1133 aaKnown RBP16.33■□□□□ 0.21
CIITA-204ENST00000570546 DCLK2Q8N568 766 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 MCUQ8NE86 351 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 ATL2Q8NHH9 583 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 RBAKQ9NYW8 714 aaPredicted RBP16.33■□□□□ 0.21
CIITA-204ENST00000570546 PCSK1NQ9UHG2 260 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 TTC4O95801 387 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 KPNA2P52292 529 aaKnown RBP16.33■□□□□ 0.21
CIITA-204ENST00000570546 OR6B3Q8NGW1 331 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 ANKS1AQ92625 1134 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 TRAIPQ9BWF2 469 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 EHD2Q9NZN4 543 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 G3BP2Q9UN86 482 aaKnown RBP16.33■□□□□ 0.21
CIITA-204ENST00000570546 PLAGL2Q9UPG8 496 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 FIS1Q9Y3D6 152 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 HEY1Q9Y5J3 304 aa16.33■□□□□ 0.21
CIITA-204ENST00000570546 SLC37A4O43826 429 aa16.33■□□□□ 0.2
CIITA-204ENST00000570546 NDUFB10O96000 172 aa16.33■□□□□ 0.2
CIITA-204ENST00000570546 KRT7P08729 469 aa16.33■□□□□ 0.2
CIITA-204ENST00000570546 HERVK_113P62684 666 aa16.33■□□□□ 0.2
CIITA-204ENST00000570546 SEC23AQ15436 765 aa16.33■□□□□ 0.2
CIITA-204ENST00000570546 ETNK1Q9HBU6 452 aa16.33■□□□□ 0.2
CIITA-204ENST00000570546 UVRAGQ9P2Y5 699 aa16.33■□□□□ 0.2
CIITA-204ENST00000570546 DCTN4Q9UJW0 460 aa16.33■□□□□ 0.2
CIITA-204ENST00000570546 PITPNM2Q9BZ72 1349 aa16.33■□□□□ 0.2
CIITA-204ENST00000570546 PSMC1P62191 440 aaKnown RBP16.33■□□□□ 0.2
CIITA-204ENST00000570546 RBBP5Q15291 538 aaKnown RBP16.33■□□□□ 0.2
CIITA-204ENST00000570546 ZC2HC1CQ53FD0 456 aaPredicted RBP16.33■□□□□ 0.2
CIITA-204ENST00000570546 MUM1L1Q5H9M0 696 aa16.33■□□□□ 0.2
CIITA-204ENST00000570546 CYP26B1Q9NR63 512 aa16.33■□□□□ 0.2
CIITA-204ENST00000570546 TCP11X1B4DZS4 312 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 TMEM253P0C7T8 217 aa16.32■□□□□ 0.2
CIITA-204ENST00000570546 KLRK1P26718 216 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms