RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 LRRC71Q8N4P6 559 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 PPP1R13LQ8WUF5 828 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 GLG1Q92896 1179 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 EXOC7Q9UPT5 735 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 PCDHGC5Q9Y5F6 944 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 FTLP02792 175 aaPredicted RBP10.73□□□□□ -0.69
VPS53-206ENST00000570359 GJB1P08034 283 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 MMEP08473 750 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 SRGAP2CP0DJJ0 459 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 UBA1P22314 1058 aaKnown RBP10.73□□□□□ -0.69
VPS53-206ENST00000570359 CARSP49589 748 aaKnown RBP10.73□□□□□ -0.69
VPS53-206ENST00000570359 NCKAP1LP55160 1127 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 WNT7BP56706 349 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 OSTNP61366 133 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 GPS2Q13227 327 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 MESDQ14696 234 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 TMEM132AQ24JP5 1023 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 GJC2Q5T442 439 aaPredicted RBP10.73□□□□□ -0.69
VPS53-206ENST00000570359 SCARA3Q6AZY7 606 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 LLGL2Q6P1M3 1020 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 CCNI2Q6ZMN8 369 aaPredicted RBP10.73□□□□□ -0.69
VPS53-206ENST00000570359 METTL13Q8N6R0 699 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 LMO3Q8TAP4 145 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 ASAP3Q8TDY4 903 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 TRAPPC12Q8WVT3 735 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 COPS5Q92905 334 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 AGPAT1Q99943 283 aa10.73□□□□□ -0.69
VPS53-206ENST00000570359 GTPBP10A4D1E9 387 aaKnown RBP10.72□□□□□ -0.69
VPS53-206ENST00000570359 MAP2K7O14733 419 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 GGPS1O95749 300 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 SUPT20HL2P0C7V6 817 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 ATP4AP20648 1035 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 NF2P35240 595 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 PRKCIP41743 596 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 ALDH5A1P51649 535 aaPredicted RBP10.72□□□□□ -0.69
VPS53-206ENST00000570359 NLRP11P59045 1033 aaKnown RBP10.72□□□□□ -0.69
VPS53-206ENST00000570359 IGBP1P78318 339 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 MAP9Q49MG5 647 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 WDR93Q6P2C0 686 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 NOP9Q86U38 636 aaKnown RBP10.72□□□□□ -0.69
VPS53-206ENST00000570359 PASD1Q8IV76 773 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 FBXO16Q8IX29 292 aaPredicted RBP10.72□□□□□ -0.69
VPS53-206ENST00000570359 DEPTORQ8TB45 409 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 FBXO41Q8TF61 875 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 KREMEN1Q96MU8 473 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 TCHPQ9BT92 498 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 TARS2Q9BW92 718 aaKnown RBP10.72□□□□□ -0.69
VPS53-206ENST00000570359 TXNRD2Q9NNW7 524 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 ANKEF1Q9NU02 776 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 STIM2Q9P246 746 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 COG5Q9UP83 839 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 NOC2LQ9Y3T9 749 aaKnown RBP10.72□□□□□ -0.69
VPS53-206ENST00000570359 LTBP3Q9NS15 1303 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 RAD51CO43502 376 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 CSDE1O75534 798 aaKnown RBP10.72□□□□□ -0.69
VPS53-206ENST00000570359 FAM153BP0C7A2 387 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 MAPTP10636 758 aaKnown RBP10.72□□□□□ -0.69
VPS53-206ENST00000570359 GGCXP38435 758 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 STRN3Q13033 797 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 FAM153CQ494X1 144 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 C9orf131Q5VYM1 1079 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 ABHD15Q6UXT9 468 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 TAS1R3Q7RTX0 852 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 KCTD17Q8N5Z5 321 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 HNRNPLLQ8WVV9 542 aaKnown RBP10.72□□□□□ -0.69
VPS53-206ENST00000570359 RPGRIP1Q96KN7 1286 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 CELF4Q9BZC1 486 aaKnown RBP10.72□□□□□ -0.69
VPS53-206ENST00000570359 SPATC1LQ9H0A9 340 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 CENPHQ9H3R5 247 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 FAM153AQ9UHL3 310 aa10.72□□□□□ -0.69
VPS53-206ENST00000570359 SOWAHBA6NEL2 793 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 TTLL13PA6NNM8 815 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 KRIT1O00522 736 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 DGAT1O75907 488 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 CYP2C8P10632 490 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 TCF7P36402 384 aaPredicted RBP10.71□□□□□ -0.69
VPS53-206ENST00000570359 MARCKSL1P49006 195 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 DAB2IPQ5VWQ8 1189 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 TTC19Q6DKK2 380 aaPredicted RBP10.71□□□□□ -0.69
VPS53-206ENST00000570359 MAP4K3Q8IVH8 894 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 TMEM130Q8N3G9 435 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 KIFAP3Q92845 792 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 FNBP1Q96RU3 617 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 PCDHB18PQ96TA0 734 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 ASCC2Q9H1I8 757 aaPredicted RBP10.71□□□□□ -0.69
VPS53-206ENST00000570359 DPH5Q9H2P9 285 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 MAP3K20Q9NYL2 800 aaKnown RBP10.71□□□□□ -0.69
VPS53-206ENST00000570359 HPCAL4Q9UM19 191 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 RLFQ13129 1914 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 PARP14Q460N5 1801 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 SPATA31C2B4DYI2 1134 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 LYPLA2O95372 231 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 OATP04181 439 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 GJC1P36383 396 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 Q3C1V9 767 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 SV2AQ7L0J3 742 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 SLC9A9Q8IVB4 645 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 MMGT1Q8N4V1 131 aa10.71□□□□□ -0.69
VPS53-206ENST00000570359 TSEN2Q8NCE0 465 aaKnown RBP10.71□□□□□ -0.69
VPS53-206ENST00000570359 PARD3BQ8TEW8 1205 aa10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms