RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 ZSWIM1Q9BR11 485 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 KLHL11Q9NVR0 708 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 CNTNAP4Q9C0A0 1308 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 LRP5O75197 1615 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 TCP10L2B9ZVM9 353 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 SLC16A4O15374 487 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 BBOX1O75936 387 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 AGTP01019 485 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 ATF2P15336 505 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 RWDD2BP57060 319 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 LMBRD2Q68DH5 695 aaPredicted RBP15.54■□□□□ 0.08
VPS35-210ENST00000568784 RASGEF1CQ8N431 466 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 NACC1Q96RE7 527 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 TGS1Q96RS0 853 aaKnown RBP15.54■□□□□ 0.08
VPS35-210ENST00000568784 CDC42EP4Q9H3Q1 356 aaKnown RBP15.54■□□□□ 0.08
VPS35-210ENST00000568784 SPATA31A5Q5VU36 1347 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 SPATA31A7Q8IWB4 1347 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 POLR2MP0CAP2 368 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 PEX3P56589 373 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 SESN3P58005 492 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 PASD1Q8IV76 773 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 ANAPC5Q9UJX4 755 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 ATF5Q9Y2D1 282 aaPredicted RBP15.54■□□□□ 0.08
VPS35-210ENST00000568784 A0A1B0GUL6 1792 aa15.54■□□□□ 0.08
VPS35-210ENST00000568784 A0A0A6YYK5 440 aaPredicted RBP15.53■□□□□ 0.08
VPS35-210ENST00000568784 CLRN2A0PK11 232 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 WDR91A4D1P6 747 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 MIF4GDA9UHW6 222 aaKnown RBP15.53■□□□□ 0.08
VPS35-210ENST00000568784 SNHG28P0DPA3 235 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 RARAP10276 462 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 MYCLP12524 364 aaPredicted RBP15.53■□□□□ 0.08
VPS35-210ENST00000568784 PAX7P23759 505 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 ATP11AP98196 1134 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 HYIQ5T013 277 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 PADI6Q6TGC4 694 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 PRUNE1Q86TP1 453 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 SLC47A2Q86VL8 602 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 DHX38Q92620 1227 aaKnown RBP15.53■□□□□ 0.08
VPS35-210ENST00000568784 HAUS1Q96CS2 278 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 CCDC77Q9BR77 488 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 PNMA3Q9UL41 463 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 MYO3BQ8WXR4 1341 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 MYH1P12882 1939 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 MYH4Q9Y623 1939 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 A8MUI8 341 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 GAS8O95995 478 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 HARSP12081 509 aaKnown RBP15.53■□□□□ 0.08
VPS35-210ENST00000568784 COILP38432 576 aaPredicted RBP15.53■□□□□ 0.08
VPS35-210ENST00000568784 DDR1Q08345 913 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 IFT74Q96LB3 600 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 RUNDC3BQ96NL0 473 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 KIFC3Q9BVG8 833 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 STXBP5LQ9Y2K9 1186 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.53■□□□□ 0.08
VPS35-210ENST00000568784 BTNL10A8MVZ5 291 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 RIPK2O43353 540 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 IL1R1P14778 569 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 ATF7P17544 494 aaPredicted RBP15.53■□□□□ 0.08
VPS35-210ENST00000568784 HOXA7P31268 230 aaPredicted RBP15.53■□□□□ 0.08
VPS35-210ENST00000568784 GCKP35557 465 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 GABPAQ06546 454 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 ZSWIM2Q8NEG5 633 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 PI4K2AQ9BTU6 479 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 VPS37BQ9H9H4 285 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 ETNK1Q9HBU6 452 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 GPRC5CQ9NQ84 441 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 PI4KBQ9UBF8 816 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 INTUQ9ULD6 942 aa15.53■□□□□ 0.08
VPS35-210ENST00000568784 USP15Q9Y4E8 981 aaPredicted RBP15.53■□□□□ 0.08
VPS35-210ENST00000568784 SLITRK3O94933 977 aa15.52■□□□□ 0.08
VPS35-210ENST00000568784 GH1P01241 217 aa15.52■□□□□ 0.08
VPS35-210ENST00000568784 ECE1P42892 770 aa15.52■□□□□ 0.08
VPS35-210ENST00000568784 JAM2P57087 298 aa15.52■□□□□ 0.08
VPS35-210ENST00000568784 ZNF720Q7Z2F6 126 aa15.52■□□□□ 0.08
VPS35-210ENST00000568784 SLC13A5Q86YT5 568 aaPredicted RBP15.52■□□□□ 0.08
VPS35-210ENST00000568784 CSRNP1Q96S65 589 aa15.52■□□□□ 0.08
VPS35-210ENST00000568784 ANKRD36CQ5JPF3 1778 aa15.52■□□□□ 0.08
VPS35-210ENST00000568784 ANP32DO95626 131 aa15.52■□□□□ 0.08
VPS35-210ENST00000568784 SLFN11Q7Z7L1 901 aa15.52■□□□□ 0.08
VPS35-210ENST00000568784 SLC17A8Q8NDX2 589 aa15.52■□□□□ 0.08
VPS35-210ENST00000568784 KDM4CQ9H3R0 1056 aa15.52■□□□□ 0.08
VPS35-210ENST00000568784 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.52■□□□□ 0.08
VPS35-210ENST00000568784 PAPPAQ13219 1627 aa15.52■□□□□ 0.08
VPS35-210ENST00000568784 ARP10275 920 aa15.52■□□□□ 0.07
VPS35-210ENST00000568784 PPP3CAQ08209 521 aa15.52■□□□□ 0.07
VPS35-210ENST00000568784 AUHQ13825 339 aaKnown RBP15.52■□□□□ 0.07
VPS35-210ENST00000568784 SETDB1Q15047 1291 aa15.52■□□□□ 0.07
VPS35-210ENST00000568784 LLGL2Q6P1M3 1020 aa15.52■□□□□ 0.07
VPS35-210ENST00000568784 MYH7BA7E2Y1 1941 aa15.52■□□□□ 0.07
VPS35-210ENST00000568784 ERFP50548 548 aa15.52■□□□□ 0.07
VPS35-210ENST00000568784 PRELPP51888 382 aa15.52■□□□□ 0.07
VPS35-210ENST00000568784 NPEPPSP55786 919 aa15.52■□□□□ 0.07
VPS35-210ENST00000568784 TEKT3Q9BXF9 490 aa15.52■□□□□ 0.07
VPS35-210ENST00000568784 PRR12Q9ULL5 1215 aa15.52■□□□□ 0.07
VPS35-210ENST00000568784 SCAF8Q9UPN6 1271 aaKnown RBP15.52■□□□□ 0.07
VPS35-210ENST00000568784 ZDHHC24Q6UX98 284 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 DCAF4Q8WV16 495 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 PITPNM3Q9BZ71 974 aa15.51■□□□□ 0.07
VPS35-210ENST00000568784 TOPORSQ9NS56 1045 aaPredicted RBP15.51■□□□□ 0.07
VPS35-210ENST00000568784 DIS3Q9Y2L1 958 aaKnown RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms