RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-223ENST00000566472 PPP1R2P3Q6NXS1 205 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 MIS18BP1Q6P0N0 1132 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 POTEAQ6S8J7 498 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 NSMFQ6X4W1 530 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 ANO5Q75V66 913 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 ZNF677Q86XU0 584 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 KLHL7Q8IXQ5 586 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 RPUSD2Q8IZ73 545 aaKnown RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 IQCKQ8N0W5 287 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 GPD1LQ8N335 351 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 UBL4BQ8N7F7 174 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 PLEKHO2Q8TD55 490 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 EPS8L1Q8TE68 723 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 PARD3BQ8TEW8 1205 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 ARHGEF26Q96DR7 871 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 TRIM11Q96F44 468 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 ZFP91Q96JP5 570 aaPredicted RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 CEP170P1Q96L14 293 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 IFT74Q96LB3 600 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 NT5C1BQ96P26 610 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 ZIM3Q96PE6 472 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 FAM129AQ9BZQ8 928 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 TSPYL1Q9H0U9 437 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 WNT8AQ9H1J5 351 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 PCIF1Q9H4Z3 704 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 ACAD9Q9H845 621 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 ATP6V0A4Q9HBG4 840 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 JPH1Q9HDC5 661 aaPredicted RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 UBE2TQ9NPD8 197 aaPredicted RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 KMT5AQ9NQR1 393 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 PDLIM7Q9NR12 457 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 TMOD4Q9NZQ9 345 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 UVRAGQ9P2Y5 699 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 RGS17Q9UGC6 210 aaPredicted RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 HACL1Q9UJ83 578 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 NOCTQ9UK39 431 aaKnown RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 GTF3C4Q9UKN8 822 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 ZNF214Q9UL59 606 aaPredicted RBP6.75□□□□□ -1.33
CLN3-223ENST00000566472 NFU1Q9UMS0 254 aa6.75□□□□□ -1.33
CLN3-223ENST00000566472 LOC285556D6RIA3 1793 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 DENND3A2RUS2 1198 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 CCDC169A6NNP5 214 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 SPATA31C2B4DYI2 1134 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 SART1O43290 800 aaKnown RBP6.74□□□□□ -1.33
CLN3-223ENST00000566472 EXTL3O43909 919 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 ZEB2O60315 1214 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 PHACTR2O75167 634 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 LRRN2O75325 713 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 PPFIA4O75335 1185 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 CYP1A2P05177 515 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 SUPT20HL2P0C7V6 817 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 ABCB4P21439 1286 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 CNGA1P29973 690 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 ECHS1P30084 290 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 ADSSP30520 456 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 CHRNA3P32297 505 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 PDE6CP51160 858 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 DRG2P55039 364 aaKnown RBP6.74□□□□□ -1.33
CLN3-223ENST00000566472 CDR2Q01850 454 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 POU5F1Q01860 360 aaKnown RBP6.74□□□□□ -1.33
CLN3-223ENST00000566472 CYP24A1Q07973 514 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 SUPT20HL1Q3ZLR7 823 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 NBPF12Q5TAG4 269 aaPredicted RBP6.74□□□□□ -1.33
CLN3-223ENST00000566472 SEL1L2Q5TEA6 688 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 AGBL2Q5U5Z8 902 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 PLA2G4FQ68DD2 849 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 KDM7AQ6ZMT4 941 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 CATSPERGQ6ZRH7 1159 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 MAEAQ7L5Y9 396 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 CBWD2Q8IUF1 395 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 ARFGAP2Q8N6H7 521 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 RDH13Q8NBN7 331 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 FBXL13Q8NEE6 735 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 CHST13Q8NET6 341 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 DNERQ8NFT8 737 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 HELQQ8TDG4 1101 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 RNPC3Q96LT9 517 aaKnown RBP6.74□□□□□ -1.33
CLN3-223ENST00000566472 KREMEN1Q96MU8 473 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 GDAP1L1Q96MZ0 367 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 ZSWIM1Q9BR11 485 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 PDGFDQ9GZP0 370 aaPredicted RBP6.74□□□□□ -1.33
CLN3-223ENST00000566472 MTFR1LQ9H019 292 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 FAM107BQ9H098 131 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 THAP2Q9H0W7 228 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 OSGEPQ9NPF4 335 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 GPRC5CQ9NQ84 441 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 AVENQ9NQS1 362 aaPredicted RBP6.74□□□□□ -1.33
CLN3-223ENST00000566472 HOMER2Q9NSB8 354 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 SEPT11Q9NVA2 429 aaKnown RBP6.74□□□□□ -1.33
CLN3-223ENST00000566472 RAB20Q9NX57 234 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 CTTNBP2NLQ9P2B4 639 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 ARHGAP28Q9P2N2 729 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 GABBR1Q9UBS5 961 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 SLC9A2Q9UBY0 812 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 FBXO40Q9UH90 709 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 CNOT7Q9UIV1 285 aaKnown RBP6.74□□□□□ -1.33
CLN3-223ENST00000566472 RASAL2Q9UJF2 1139 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 UTP11Q9Y3A2 253 aaKnown RBP6.74□□□□□ -1.33
CLN3-223ENST00000566472 CD2APQ9Y5K6 639 aa6.74□□□□□ -1.33
CLN3-223ENST00000566472 STYXL1Q9Y6J8 313 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms