RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CNTNAP2Q9UHC6 1331 aa8.23□□□□□ -1.09
VPS4A-203ENST00000564399 FASNP49327 2511 aaKnown RBP8.22□□□□□ -1.09
VPS4A-203ENST00000564399 TMEM150BA6NC51 233 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 TGM5O43548 720 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 TBC1D4O60343 1298 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 GAS7O60861 476 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 NR1I2O75469 434 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 CD72P21854 359 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 SFNP31947 248 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 JAK3P52333 1124 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 PRKCQQ04759 706 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 COL9A3Q14050 684 aaPredicted RBP8.22□□□□□ -1.09
VPS4A-203ENST00000564399 TARBP2Q15633 366 aaKnown RBP8.22□□□□□ -1.09
VPS4A-203ENST00000564399 SLC44A4Q53GD3 710 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 XKR3Q5GH77 459 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 PPM1JQ5JR12 505 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 ZBTB41Q5SVQ8 909 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 APOA5Q6Q788 366 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 TSSK4Q6SA08 328 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 PARM1Q6UWI2 310 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 MRPL10Q7Z7H8 261 aaKnown RBP8.22□□□□□ -1.09
VPS4A-203ENST00000564399 SGMS1Q86VZ5 419 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 KSR1Q8IVT5 923 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 REXO1Q8N1G1 1221 aaKnown RBP8.22□□□□□ -1.09
VPS4A-203ENST00000564399 ZBTB44Q8NCP5 570 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 EXOC6Q8TAG9 804 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 CRYGNQ8WXF5 182 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 FGF14Q92915 247 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 TEKT3Q9BXF9 490 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 EPC1Q9H2F5 836 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 RXFP1Q9HBX9 757 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 C6orf50Q9HD87 102 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 LTB4R2Q9NPC1 389 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 MARCH5Q9NX47 278 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 ZDHHC7Q9NXF8 308 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 CDH7Q9ULB5 785 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 RAB23Q9ULC3 237 aa8.22□□□□□ -1.09
VPS4A-203ENST00000564399 MTF2Q9Y483 593 aaPredicted RBP8.22□□□□□ -1.09
VPS4A-203ENST00000564399 ZFP37Q9Y6Q3 630 aaPredicted RBP8.22□□□□□ -1.09
VPS4A-203ENST00000564399 COL4A3Q01955 1670 aa8.21□□□□□ -1.09
VPS4A-203ENST00000564399 SPAG17Q6Q759 2223 aa8.21□□□□□ -1.09
VPS4A-203ENST00000564399 GOLGA8AA7E2F4 631 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 DDX11L8A8MPP1 907 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 GOLGA8BA8MQT2 603 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 SLC27A2O14975 620 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 NCAM2O15394 837 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 ZBTB43O43298 467 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 ZMYND10O75800 440 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 ITGA4P13612 1032 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 RPL17P18621 184 aaKnown RBP8.21□□□□□ -1.1
VPS4A-203ENST00000564399 MAGEA9P43362 315 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 PFKPQ01813 784 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 DSG1Q02413 1049 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 SPEM2Q0P670 501 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 FUT2Q10981 343 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 LPAL2Q16609 132 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 LRCH2Q5VUJ6 765 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 MTSS1LQ765P7 747 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 MIER3Q7Z3K6 550 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 GRASPQ7Z6J2 395 aaPredicted RBP8.21□□□□□ -1.1
VPS4A-203ENST00000564399 COLGALT2Q8IYK4 626 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 CCDC12Q8WUD4 166 aaPredicted RBP8.21□□□□□ -1.1
VPS4A-203ENST00000564399 COL26A1Q96A83 441 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 CCDC136Q96JN2 1154 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 B3GALT6Q96L58 329 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 RIT2Q99578 217 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 DDX23Q9BUQ8 820 aaKnown RBP8.21□□□□□ -1.1
VPS4A-203ENST00000564399 COLEC11Q9BWP8 271 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 NIFKQ9BYG3 293 aaKnown RBP8.21□□□□□ -1.1
VPS4A-203ENST00000564399 OSBPL6Q9BZF3 934 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 UNC45AQ9H3U1 944 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP8.21□□□□□ -1.1
VPS4A-203ENST00000564399 AGPAT5Q9NUQ2 364 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 NAP1L2Q9ULW6 460 aaPredicted RBP8.21□□□□□ -1.1
VPS4A-203ENST00000564399 POLIQ9UNA4 740 aa8.21□□□□□ -1.1
VPS4A-203ENST00000564399 IGKV6-21A0A0C4DH24 114 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 F8W810 466 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 ADAMTS3O15072 1205 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 MSH4O15457 936 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 LILRB5O75023 590 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 MAFO75444 373 aaPredicted RBP8.2□□□□□ -1.1
VPS4A-203ENST00000564399 SRGAP2CP0DJJ0 459 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 NCLP19338 710 aaKnown RBP8.2□□□□□ -1.1
VPS4A-203ENST00000564399 TGM1P22735 817 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 GNA11P29992 359 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 CIITAP33076 1130 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 NTHL1P78549 312 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 PFKFB3Q16875 520 aaPredicted RBP8.2□□□□□ -1.1
VPS4A-203ENST00000564399 USP41Q3LFD5 358 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 LIN9Q5TKA1 542 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 FUT10Q6P4F1 479 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 LILRA6Q6PI73 481 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 RSPO2Q6UXX9 243 aaPredicted RBP8.2□□□□□ -1.1
VPS4A-203ENST00000564399 TPRG1Q6ZUI0 275 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 RNF168Q8IYW5 571 aaPredicted RBP8.2□□□□□ -1.1
VPS4A-203ENST00000564399 CNNM3Q8NE01 707 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 NETO1Q8TDF5 533 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 FGF13Q92913 245 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 GJA10Q969M2 543 aa8.2□□□□□ -1.1
VPS4A-203ENST00000564399 TCEANC2Q96MN5 208 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms