RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 FRMD5Q7Z6J6 570 aa21.16■□□□□ 0.98
VPS35-202ENST00000561713 FERMT3Q86UX7 667 aa21.16■□□□□ 0.98
VPS35-202ENST00000561713 ZNF280BQ86YH2 543 aa21.16■□□□□ 0.98
VPS35-202ENST00000561713 CCDC83Q8IWF9 413 aa21.16■□□□□ 0.98
VPS35-202ENST00000561713 MTRQ99707 1265 aa21.16■□□□□ 0.98
VPS35-202ENST00000561713 TMEM60Q9H2L4 133 aa21.16■□□□□ 0.98
VPS35-202ENST00000561713 PCDHB2Q9Y5E7 798 aa21.16■□□□□ 0.98
VPS35-202ENST00000561713 RIF1Q5UIP0 2472 aaKnown RBP21.16■□□□□ 0.98
VPS35-202ENST00000561713 SKIP12755 728 aa21.15■□□□□ 0.98
VPS35-202ENST00000561713 TXKP42681 527 aa21.15■□□□□ 0.98
VPS35-202ENST00000561713 RAB27AP51159 221 aa21.15■□□□□ 0.98
VPS35-202ENST00000561713 UBXN11Q5T124 520 aa21.15■□□□□ 0.98
VPS35-202ENST00000561713 AGMOQ6ZNB7 445 aa21.15■□□□□ 0.98
VPS35-202ENST00000561713 GPR149Q86SP6 731 aa21.15■□□□□ 0.98
VPS35-202ENST00000561713 FLCNQ8NFG4 579 aa21.15■□□□□ 0.98
VPS35-202ENST00000561713 ASAP3Q8TDY4 903 aa21.15■□□□□ 0.98
VPS35-202ENST00000561713 RSPH1Q8WYR4 309 aa21.15■□□□□ 0.98
VPS35-202ENST00000561713 TTC12Q9H892 705 aaPredicted RBP21.15■□□□□ 0.98
VPS35-202ENST00000561713 PI15O43692 258 aa21.14■□□□□ 0.97
VPS35-202ENST00000561713 ZNF623O75123 536 aa21.14■□□□□ 0.97
VPS35-202ENST00000561713 SLITRK3O94933 977 aa21.14■□□□□ 0.97
VPS35-202ENST00000561713 SSBP05455 408 aaKnown RBP eCLIP21.14■□□□□ 0.97
VPS35-202ENST00000561713 ERICH6BQ5W0A0 696 aa21.14■□□□□ 0.97
VPS35-202ENST00000561713 CWF19L1Q69YN2 538 aaKnown RBP21.14■□□□□ 0.97
VPS35-202ENST00000561713 OTUD6AQ7L8S5 288 aa21.14■□□□□ 0.97
VPS35-202ENST00000561713 CPB2Q96IY4 423 aa21.14■□□□□ 0.97
VPS35-202ENST00000561713 CCDC43Q96MW1 224 aaKnown RBP21.14■□□□□ 0.97
VPS35-202ENST00000561713 SFXN1Q9H9B4 322 aa21.14■□□□□ 0.97
VPS35-202ENST00000561713 PCDHA12Q9UN75 941 aa21.14■□□□□ 0.97
VPS35-202ENST00000561713 CARNS1A5YM72 827 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 SPDYE4A6NLX3 237 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 DDHD2O94830 711 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 NPR3P17342 541 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 HOXA11P31270 313 aaPredicted RBP21.13■□□□□ 0.97
VPS35-202ENST00000561713 MCM7P33993 719 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 CLCN4P51793 760 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 CAPSQ13938 189 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 SRGAP1Q7Z6B7 1085 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 PPFIBP1Q86W92 1011 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 PIGOQ8TEQ8 1089 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 TCP11Q8WWU5 503 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 ACSF2Q96CM8 615 aaPredicted RBP21.13■□□□□ 0.97
VPS35-202ENST00000561713 KLHL5Q96PQ7 755 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 EIF2AQ9BY44 585 aaKnown RBP21.13■□□□□ 0.97
VPS35-202ENST00000561713 RSAD1Q9HA92 442 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 PPME1Q9Y570 386 aa21.13■□□□□ 0.97
VPS35-202ENST00000561713 FRYLO94915 3013 aa21.12■□□□□ 0.97
VPS35-202ENST00000561713 TSPAN1O60635 241 aa21.12■□□□□ 0.97
VPS35-202ENST00000561713 USO1O60763 962 aaKnown RBP21.12■□□□□ 0.97
VPS35-202ENST00000561713 ERLIN2O94905 339 aa21.12■□□□□ 0.97
VPS35-202ENST00000561713 CNPP09543 421 aaKnown RBP21.12■□□□□ 0.97
VPS35-202ENST00000561713 KLRC2P26717 231 aa21.12■□□□□ 0.97
VPS35-202ENST00000561713 TDGQ13569 410 aa21.12■□□□□ 0.97
VPS35-202ENST00000561713 CCDC149Q6ZUS6 474 aa21.12■□□□□ 0.97
VPS35-202ENST00000561713 OTOP3Q7RTS5 596 aa21.12■□□□□ 0.97
VPS35-202ENST00000561713 EMILIN2Q9BXX0 1053 aa21.12■□□□□ 0.97
VPS35-202ENST00000561713 INO80B-WBP1J3KQ70 363 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 GAS2O43903 313 aaKnown RBP21.11■□□□□ 0.97
VPS35-202ENST00000561713 LILRB3O75022 631 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 POMCP01189 267 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 RARRES1P49788 294 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 MAEAQ7L5Y9 396 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 CDR2LQ86X02 465 aaPredicted RBP21.11■□□□□ 0.97
VPS35-202ENST00000561713 URGCPQ8TCY9 931 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 NKD2Q969F2 451 aaPredicted RBP21.11■□□□□ 0.97
VPS35-202ENST00000561713 PGBD4Q96DM1 585 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 MTMR9Q96QG7 549 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 HSD17B14Q9BPX1 270 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 APOL6Q9BWW8 343 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 POLR3FQ9H1D9 316 aaPredicted RBP21.11■□□□□ 0.97
VPS35-202ENST00000561713 KCNK12Q9HB15 430 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 GPRC5CQ9NQ84 441 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 HES2Q9Y543 173 aa21.11■□□□□ 0.97
VPS35-202ENST00000561713 FAM186AA6NE01 2351 aa21.1■□□□□ 0.97
VPS35-202ENST00000561713 B4GALT5O43286 388 aa21.1■□□□□ 0.97
VPS35-202ENST00000561713 AOC1P19801 751 aa21.1■□□□□ 0.97
VPS35-202ENST00000561713 PTENP60484 403 aa21.1■□□□□ 0.97
VPS35-202ENST00000561713 FOXK2Q01167 660 aa21.1■□□□□ 0.97
VPS35-202ENST00000561713 MBTD1Q05BQ5 628 aa21.1■□□□□ 0.97
VPS35-202ENST00000561713 EXOC8Q8IYI6 725 aa21.1■□□□□ 0.97
VPS35-202ENST00000561713 SMG8Q8ND04 991 aaKnown RBP21.1■□□□□ 0.97
VPS35-202ENST00000561713 C8orf76Q96K31 380 aa21.1■□□□□ 0.97
VPS35-202ENST00000561713 RNF39Q9H2S5 420 aa21.1■□□□□ 0.97
VPS35-202ENST00000561713 IPPQ9Y573 584 aa21.1■□□□□ 0.97
VPS35-202ENST00000561713 TRIP11Q15643 1979 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 C2CD2LO14523 706 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 N4BP1O75113 896 aaKnown RBP21.09■□□□□ 0.97
VPS35-202ENST00000561713 MED24O75448 989 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 LYPLA2O95372 231 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 ALDH2P05091 517 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 GLRA2P23416 452 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 MLH1P40692 756 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 NBR1Q14596 966 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 POTEGQ6S5H5 508 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 MRPL10Q7Z7H8 261 aaKnown RBP21.09■□□□□ 0.97
VPS35-202ENST00000561713 SIX5Q8N196 739 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 NXF3Q9H4D5 531 aaKnown RBP21.09■□□□□ 0.97
VPS35-202ENST00000561713 MRPL17Q9NRX2 175 aaKnown RBP21.09■□□□□ 0.97
VPS35-202ENST00000561713 ANKEF1Q9NU02 776 aa21.09■□□□□ 0.97
VPS35-202ENST00000561713 FBXL21Q9UKT6 434 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms