RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 ARL5CA6NH57 179 aa18.01■□□□□ 0.47
SNX1-213ENST00000561026 M0R296 226 aa18.01■□□□□ 0.47
SNX1-213ENST00000561026 NRP1O14786 923 aa18.01■□□□□ 0.47
SNX1-213ENST00000561026 EPCAMP16422 314 aa18.01■□□□□ 0.47
SNX1-213ENST00000561026 ARF4P18085 180 aaPredicted RBP18.01■□□□□ 0.47
SNX1-213ENST00000561026 PPFIBP1Q86W92 1011 aa18.01■□□□□ 0.47
SNX1-213ENST00000561026 C12orf76Q8N812 135 aaPredicted RBP18.01■□□□□ 0.47
SNX1-213ENST00000561026 GAD1Q99259 594 aa18.01■□□□□ 0.47
SNX1-213ENST00000561026 POLR3FQ9H1D9 316 aaPredicted RBP18.01■□□□□ 0.47
SNX1-213ENST00000561026 FOXP1Q9H334 677 aaPredicted RBP18.01■□□□□ 0.47
SNX1-213ENST00000561026 POMKQ9H5K3 350 aa18.01■□□□□ 0.47
SNX1-213ENST00000561026 DZANK1Q9NVP4 752 aa18.01■□□□□ 0.47
SNX1-213ENST00000561026 HES2Q9Y543 173 aa18.01■□□□□ 0.47
SNX1-213ENST00000561026 B4GALT5O43286 388 aa18■□□□□ 0.47
SNX1-213ENST00000561026 USO1O60763 962 aaKnown RBP18■□□□□ 0.47
SNX1-213ENST00000561026 SP100P23497 879 aaPredicted RBP18■□□□□ 0.47
SNX1-213ENST00000561026 COLGALT2Q8IYK4 626 aa18■□□□□ 0.47
SNX1-213ENST00000561026 PBXIP1Q96AQ6 731 aa18■□□□□ 0.47
SNX1-213ENST00000561026 RIPOR3Q96MK2 946 aa18■□□□□ 0.47
SNX1-213ENST00000561026 NACC1Q96RE7 527 aa18■□□□□ 0.47
SNX1-213ENST00000561026 POLR3CQ9BUI4 534 aaPredicted RBP18■□□□□ 0.47
SNX1-213ENST00000561026 TSHZ2Q9NRE2 1034 aa18■□□□□ 0.47
SNX1-213ENST00000561026 DBR1Q9UK59 544 aaKnown RBP18■□□□□ 0.47
SNX1-213ENST00000561026 NR2E1Q9Y466 385 aa18■□□□□ 0.47
SNX1-213ENST00000561026 ZNF318Q5VUA4 2279 aa18■□□□□ 0.47
SNX1-213ENST00000561026 A0A1B0GUA9 196 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 LILRB3O75022 631 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 MED24O75448 989 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 SSBP05455 408 aaKnown RBP eCLIP17.99■□□□□ 0.47
SNX1-213ENST00000561026 CNPP09543 421 aaKnown RBP17.99■□□□□ 0.47
SNX1-213ENST00000561026 WEE2P0C1S8 567 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 MLH1P40692 756 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 MTHFRP42898 656 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 DSC1Q08554 894 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 SIGLEC14Q08ET2 396 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 ORC2Q13416 577 aaPredicted RBP17.99■□□□□ 0.47
SNX1-213ENST00000561026 ZNF174Q15697 407 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 PTPN21Q16825 1174 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 ATAT1Q5SQI0 421 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 RARS2Q5T160 578 aaKnown RBP17.99■□□□□ 0.47
SNX1-213ENST00000561026 KANK3Q6NY19 840 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 MAEAQ7L5Y9 396 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 MCPH1Q8NEM0 835 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 FBXO18Q8NFZ0 1043 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 ZSCAN31Q96LW9 406 aaPredicted RBP17.99■□□□□ 0.47
SNX1-213ENST00000561026 FBXL18Q96ME1 805 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 ZFP42Q96MM3 310 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 KLHL5Q96PQ7 755 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 EMILIN2Q9BXX0 1053 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 TRIM6Q9C030 488 aaPredicted RBP17.99■□□□□ 0.47
SNX1-213ENST00000561026 GPRC5CQ9NQ84 441 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 MRPL17Q9NRX2 175 aaKnown RBP17.99■□□□□ 0.47
SNX1-213ENST00000561026 MIOSQ9NXC5 875 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 GIT1Q9Y2X7 761 aa17.99■□□□□ 0.47
SNX1-213ENST00000561026 OR52Z1P0C646 297 aa17.98■□□□□ 0.47
SNX1-213ENST00000561026 KLRC2P26717 231 aa17.98■□□□□ 0.47
SNX1-213ENST00000561026 RPA1P27694 616 aa17.98■□□□□ 0.47
SNX1-213ENST00000561026 OR1G1P47890 313 aa17.98■□□□□ 0.47
SNX1-213ENST00000561026 RBM25P49756 843 aaKnown RBP17.98■□□□□ 0.47
SNX1-213ENST00000561026 CABP7Q86V35 215 aa17.98■□□□□ 0.47
SNX1-213ENST00000561026 HACE1Q8IYU2 909 aa17.98■□□□□ 0.47
SNX1-213ENST00000561026 KIF2CQ99661 725 aa17.98■□□□□ 0.47
SNX1-213ENST00000561026 APOL6Q9BWW8 343 aa17.98■□□□□ 0.47
SNX1-213ENST00000561026 NXF3Q9H4D5 531 aaKnown RBP17.98■□□□□ 0.47
SNX1-213ENST00000561026 MARCH5Q9NX47 278 aa17.98■□□□□ 0.47
SNX1-213ENST00000561026 PRG3Q9Y2Y8 225 aaPredicted RBP17.98■□□□□ 0.47
SNX1-213ENST00000561026 LRRIQ4A6NIV6 560 aa17.97■□□□□ 0.47
SNX1-213ENST00000561026 EFEMP2O95967 443 aa17.97■□□□□ 0.47
SNX1-213ENST00000561026 SOD2P04179 222 aa17.97■□□□□ 0.47
SNX1-213ENST00000561026 SCNN1GP51170 649 aa17.97■□□□□ 0.47
SNX1-213ENST00000561026 CLCN4P51793 760 aa17.97■□□□□ 0.47
SNX1-213ENST00000561026 HMGN5P82970 282 aaKnown RBP17.97■□□□□ 0.47
SNX1-213ENST00000561026 KIAA1841Q6NSI8 718 aa17.97■□□□□ 0.47
SNX1-213ENST00000561026 SLC27A1Q6PCB7 646 aa17.97■□□□□ 0.47
SNX1-213ENST00000561026 TAS1R1Q7RTX1 841 aa17.97■□□□□ 0.47
SNX1-213ENST00000561026 CDR2LQ86X02 465 aaPredicted RBP17.97■□□□□ 0.47
SNX1-213ENST00000561026 GSTCDQ8NEC7 633 aa17.97■□□□□ 0.47
SNX1-213ENST00000561026 ERMNQ8TAM6 284 aa17.97■□□□□ 0.47
SNX1-213ENST00000561026 ASIC4Q96FT7 647 aa17.97■□□□□ 0.47
SNX1-213ENST00000561026 ZDBF2Q9HCK1 2354 aa17.97■□□□□ 0.47
SNX1-213ENST00000561026 SH2B1Q9NRF2 756 aaPredicted RBP17.97■□□□□ 0.47
SNX1-213ENST00000561026 C2CD4DB7Z1M9 353 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 NR1I2O75469 434 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 AKAP5P24588 427 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 TRAPPC10P48553 1259 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 TTC38Q5R3I4 469 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 CDCA2Q69YH5 1023 aaPredicted RBP17.96■□□□□ 0.47
SNX1-213ENST00000561026 POTEGQ6S5H5 508 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 TMC5Q6UXY8 1006 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 PPP4R3CPQ6ZMV5 832 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 ZBTB33Q86T24 672 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 NOSTRINQ8IVI9 506 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 RNF168Q8IYW5 571 aaPredicted RBP17.96■□□□□ 0.47
SNX1-213ENST00000561026 FAM184AQ8NB25 1140 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 PRIMPOLQ96LW4 560 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 RPS6KC1Q96S38 1066 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 HERC2P3Q9BVR0 1158 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 FZD8Q9H461 694 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 SFXN1Q9H9B4 322 aa17.96■□□□□ 0.47
SNX1-213ENST00000561026 SSX2IPQ9Y2D8 614 aa17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms