RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 SUMF1Q8NBK3 374 aa19.95■□□□□ 0.78
TSPAN3-208ENST00000560514 ATRIPQ8WXE1 791 aa19.95■□□□□ 0.78
TSPAN3-208ENST00000560514 SLC7A3Q8WY07 619 aa19.95■□□□□ 0.78
TSPAN3-208ENST00000560514 ZNF707Q96C28 371 aaPredicted RBP19.95■□□□□ 0.78
TSPAN3-208ENST00000560514 CEP89Q96ST8 783 aa19.95■□□□□ 0.78
TSPAN3-208ENST00000560514 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.95■□□□□ 0.78
TSPAN3-208ENST00000560514 MARCH5Q9NX47 278 aa19.95■□□□□ 0.78
TSPAN3-208ENST00000560514 COL4A3BPQ9Y5P4 624 aa19.95■□□□□ 0.78
TSPAN3-208ENST00000560514 FRYLO94915 3013 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 ANHXE9PGG2 379 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 SPTLC1O15269 473 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 KRT37O76014 449 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 SRGAP2CP0DJJ0 459 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 NCLP19338 710 aaKnown RBP19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 STARD6P59095 220 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 DSG1Q02413 1049 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 HTR4Q13639 388 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 EXOC8Q8IYI6 725 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 GJA10Q969M2 543 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 COLEC11Q9BWP8 271 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 PRKD2Q9BZL6 878 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 IFT122Q9HBG6 1241 aa19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 TDRD15B5MCY1 1934 aaKnown RBP19.94■□□□□ 0.78
TSPAN3-208ENST00000560514 TPRP12270 2363 aaKnown RBP19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 POTEMA6NI47 508 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 PRPF3O43395 683 aaKnown RBP19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 PSMD10O75832 226 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 ERLIN2O94905 339 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 C1RP00736 705 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 FSHRP23945 695 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 PSMC5P62195 406 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 CREMQ03060 361 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 KRT32Q14532 448 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 ZNF528Q3MIS6 628 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 POTEGQ6S5H5 508 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 GLYCTKQ8IVS8 523 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 COLGALT2Q8IYK4 626 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 PSPC1Q8WXF1 523 aaKnown RBP19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 FBXO4Q9UKT5 387 aa19.93■□□□□ 0.78
TSPAN3-208ENST00000560514 MYH15Q9Y2K3 1946 aa19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 KANSL1LA0AUZ9 987 aa19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 TGM5O43548 720 aa19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 DKC1O60832 514 aaKnown RBP eCLIP19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 STBD1O95210 358 aa19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 HMGB1P09429 215 aaKnown RBP19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 GLULP15104 373 aa19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 GPC5P78333 572 aa19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 NCBP1Q09161 790 aaKnown RBP19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 SNW1Q13573 536 aaKnown RBP19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 UBXN2BQ14CS0 331 aa19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 ST13P5Q8NFI4 369 aaPredicted RBP19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 GAD1Q99259 594 aa19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 C22orf23Q9BZE7 217 aa19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 CDV3Q9UKY7 258 aaKnown RBP19.92■□□□□ 0.78
TSPAN3-208ENST00000560514 ARL5CA6NH57 179 aa19.91■□□□□ 0.78
TSPAN3-208ENST00000560514 LRRN2O75325 713 aa19.91■□□□□ 0.78
TSPAN3-208ENST00000560514 CSTF1Q05048 431 aaKnown RBP19.91■□□□□ 0.78
TSPAN3-208ENST00000560514 USP41Q3LFD5 358 aa19.91■□□□□ 0.78
TSPAN3-208ENST00000560514 Q4G0T1 1027 aa19.91■□□□□ 0.78
TSPAN3-208ENST00000560514 PLA2G4FQ68DD2 849 aa19.91■□□□□ 0.78
TSPAN3-208ENST00000560514 ANO5Q75V66 913 aa19.91■□□□□ 0.78
TSPAN3-208ENST00000560514 MTSS1LQ765P7 747 aa19.91■□□□□ 0.78
TSPAN3-208ENST00000560514 HACE1Q8IYU2 909 aa19.91■□□□□ 0.78
TSPAN3-208ENST00000560514 RNF168Q8IYW5 571 aaPredicted RBP19.91■□□□□ 0.78
TSPAN3-208ENST00000560514 PCDHGA2Q9Y5H1 932 aa19.91■□□□□ 0.78
TSPAN3-208ENST00000560514 PRR5-ARHGAP8B1AHC4 643 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 HOXA11P31270 313 aaPredicted RBP19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 MLH1P40692 756 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 MAGEA9P43362 315 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 NLRP5P59047 1200 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 ARHGAP8P85298 464 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 PFKPQ01813 784 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 LMNB2Q03252 620 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 PRKCQQ04759 706 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 MLF2Q15773 248 aaPredicted RBP19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 UBXN11Q5T124 520 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 MAML2Q8IZL2 1156 aaPredicted RBP19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 TBCKQ8TEA7 893 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 TCP11Q8WWU5 503 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 PRPF31Q8WWY3 499 aaKnown RBP19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 TMEM143Q96AN5 459 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 CEP170P1Q96L14 293 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 TRIM6Q9C030 488 aaPredicted RBP19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 SLKQ9H2G2 1235 aaPredicted RBP19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 CHST7Q9NS84 486 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 VPS54Q9P1Q0 977 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 FNIP2Q9P278 1114 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 IPPQ9Y573 584 aa19.9■□□□□ 0.78
TSPAN3-208ENST00000560514 ZMYND10O75800 440 aa19.89■□□□□ 0.77
TSPAN3-208ENST00000560514 PAPLNO95428 1278 aa19.89■□□□□ 0.77
TSPAN3-208ENST00000560514 SCNN1GP51170 649 aa19.89■□□□□ 0.77
TSPAN3-208ENST00000560514 ATXN1P54253 815 aaKnown RBP19.89■□□□□ 0.77
TSPAN3-208ENST00000560514 LAMTOR4Q0VGL1 99 aa19.89■□□□□ 0.77
TSPAN3-208ENST00000560514 ADCK5Q3MIX3 580 aa19.89■□□□□ 0.77
TSPAN3-208ENST00000560514 LIN9Q5TKA1 542 aa19.89■□□□□ 0.77
TSPAN3-208ENST00000560514 FUT10Q6P4F1 479 aa19.89■□□□□ 0.77
TSPAN3-208ENST00000560514 GPR65Q8IYL9 337 aa19.89■□□□□ 0.77
TSPAN3-208ENST00000560514 RNF149Q8NC42 400 aa19.89■□□□□ 0.77
TSPAN3-208ENST00000560514 SMG8Q8ND04 991 aaKnown RBP19.89■□□□□ 0.77
TSPAN3-208ENST00000560514 FGF14Q92915 247 aa19.89■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms