RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 TMEM221A6NGB7 291 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 M0R296 226 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 TSPAN1O60635 241 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 SSBP05455 408 aaKnown RBP eCLIP13.94□□□□□ -0.18
SNX1-209ENST00000559961 OR52Z1P0C646 297 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 ARL2P36404 184 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 RARRES1P49788 294 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 PPP2R5AQ15172 486 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 ZNF174Q15697 407 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 SLC27A1Q6PCB7 646 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 SYCE2Q6PIF2 218 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 MAEAQ7L5Y9 396 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 ZNF280BQ86YH2 543 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 PLCD3Q8N3E9 789 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 AUTS2Q8WXX7 1259 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 CPB2Q96IY4 423 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 IFT74Q96LB3 600 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 MTMR9Q96QG7 549 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 ADPGKQ9BRR6 497 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 POLR3CQ9BUI4 534 aaPredicted RBP13.94□□□□□ -0.18
SNX1-209ENST00000559961 UPF2Q9HAU5 1272 aaKnown RBP13.94□□□□□ -0.18
SNX1-209ENST00000559961 PRMT7Q9NVM4 692 aaPredicted RBP13.94□□□□□ -0.18
SNX1-209ENST00000559961 DNAJB4Q9UDY4 337 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 PARP2Q9UGN5 583 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 REV3LO60673 3130 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 MYO7AQ13402 2215 aa13.94□□□□□ -0.18
SNX1-209ENST00000559961 ARL5CA6NH57 179 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 POTEMA6NI47 508 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 MEIS3P2A8K0S8 358 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 NRP1O14786 923 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 ADH1AP07327 375 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 SP100P23497 879 aaPredicted RBP13.93□□□□□ -0.18
SNX1-209ENST00000559961 TRAPPC10P48553 1259 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 SIGLEC14Q08ET2 396 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 CAPSQ13938 189 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 KCNC3Q14003 757 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 HFE2Q6ZVN8 426 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 IFNLR1Q8IU57 520 aaPredicted RBP13.93□□□□□ -0.18
SNX1-209ENST00000559961 TDRD5Q8NAT2 981 aaKnown RBP13.93□□□□□ -0.18
SNX1-209ENST00000559961 PRIMPOLQ96LW4 560 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 GAD1Q99259 594 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 SFXN1Q9H9B4 322 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 PRG3Q9Y2Y8 225 aaPredicted RBP13.93□□□□□ -0.18
SNX1-209ENST00000559961 LOXHD1Q8IVV2 1947 aa13.93□□□□□ -0.18
SNX1-209ENST00000559961 C2CD2LO14523 706 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 ST18O60284 1047 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 NPTXRO95502 500 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 SOD2P04179 222 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 MUTP22033 750 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 RPA1P27694 616 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 CCT6AP40227 531 aaKnown RBP13.92□□□□□ -0.18
SNX1-209ENST00000559961 MLH1P40692 756 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 CREMQ03060 361 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 MBTD1Q05BQ5 628 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 MTMR3Q13615 1198 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 PTPN14Q15678 1187 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 MAPK6Q16659 721 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 PTPN21Q16825 1174 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 TTC38Q5R3I4 469 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 UBXN11Q5T124 520 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 BMP8AQ7Z5Y6 402 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 CATSPER3Q86XQ3 398 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 UBALD2Q8IYN6 164 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 DEPTORQ8TB45 409 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 ASAP3Q8TDY4 903 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 FBXL18Q96ME1 805 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 EIF2AQ9BY44 585 aaKnown RBP13.92□□□□□ -0.18
SNX1-209ENST00000559961 XPNPEP1Q9NQW7 623 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 LRWD1Q9UFC0 647 aa13.92□□□□□ -0.18
SNX1-209ENST00000559961 FNDC1Q4ZHG4 1894 aaPredicted RBP13.91□□□□□ -0.18
SNX1-209ENST00000559961 N4BP3O15049 544 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 TADA2AO75478 443 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 DDHD2O94830 711 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 EPCAMP16422 314 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 ARF4P18085 180 aaPredicted RBP13.91□□□□□ -0.18
SNX1-209ENST00000559961 LIG1P18858 919 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 GLRA2P23416 452 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 GLUD2P49448 558 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 SCNN1GP51170 649 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 MAPK8IP2Q13387 824 aaPredicted RBP13.91□□□□□ -0.18
SNX1-209ENST00000559961 PRPF4BQ13523 1007 aaKnown RBP13.91□□□□□ -0.18
SNX1-209ENST00000559961 PADI6Q6TGC4 694 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 TMC5Q6UXY8 1006 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 OTOP3Q7RTS5 596 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 TMEM173Q86WV6 379 aaPredicted RBP13.91□□□□□ -0.18
SNX1-209ENST00000559961 NOSTRINQ8IVI9 506 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 C12orf76Q8N812 135 aaPredicted RBP13.91□□□□□ -0.18
SNX1-209ENST00000559961 SMG8Q8ND04 991 aaKnown RBP13.91□□□□□ -0.18
SNX1-209ENST00000559961 FBXO18Q8NFZ0 1043 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 KLHL5Q96PQ7 755 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 IRF2BPLQ9H1B7 796 aa13.91□□□□□ -0.18
SNX1-209ENST00000559961 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP13.91□□□□□ -0.18
SNX1-209ENST00000559961 A0A087WWV3 80 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 A0A1B0GUA9 196 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 AKAP5P24588 427 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 EFNA5P52803 228 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 GRIK3Q13003 919 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 USP41Q3LFD5 358 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 KRT79Q5XKE5 535 aa13.9□□□□□ -0.18
SNX1-209ENST00000559961 CCDC149Q6ZUS6 474 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms