RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 ARHGEF2Q92974 986 aaKnown RBP13.28□□□□□ -0.28
LDLR-205ENST00000557933 LENG9Q96B70 501 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 RBM17Q96I25 401 aaKnown RBP13.28□□□□□ -0.28
LDLR-205ENST00000557933 C9orf72Q96LT7 481 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 DNAJC18Q9H819 358 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 KLHL11Q9NVR0 708 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 DONSONQ9NYP3 566 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 TRPC6Q9Y210 931 aa13.28□□□□□ -0.28
LDLR-205ENST00000557933 BZW2Q9Y6E2 419 aaKnown RBP13.28□□□□□ -0.28
LDLR-205ENST00000557933 ATXN2Q99700 1313 aaKnown RBP13.28□□□□□ -0.28
LDLR-205ENST00000557933 ZMYM2Q9UBW7 1377 aa13.27□□□□□ -0.28
LDLR-205ENST00000557933 C5orf60A6NFR6 353 aa13.27□□□□□ -0.28
LDLR-205ENST00000557933 SPAG7O75391 227 aa13.27□□□□□ -0.28
LDLR-205ENST00000557933 FERP16591 822 aa13.27□□□□□ -0.28
LDLR-205ENST00000557933 PRKCIP41743 596 aa13.27□□□□□ -0.28
LDLR-205ENST00000557933 MMP13P45452 471 aa13.27□□□□□ -0.28
LDLR-205ENST00000557933 EN1Q05925 392 aaPredicted RBP13.27□□□□□ -0.28
LDLR-205ENST00000557933 CYP4F22Q6NT55 531 aa13.27□□□□□ -0.28
LDLR-205ENST00000557933 FAM178BQ8IXR5 827 aa13.27□□□□□ -0.28
LDLR-205ENST00000557933 SRRM1Q8IYB3 904 aaKnown RBP13.27□□□□□ -0.28
LDLR-205ENST00000557933 MICAL1Q8TDZ2 1067 aa13.27□□□□□ -0.28
LDLR-205ENST00000557933 KLHL29Q96CT2 875 aa13.27□□□□□ -0.28
LDLR-205ENST00000557933 PCDHB18PQ96TA0 734 aa13.27□□□□□ -0.28
LDLR-205ENST00000557933 MYO3BQ8WXR4 1341 aa13.27□□□□□ -0.28
LDLR-205ENST00000557933 PDXKO00764 312 aa13.27□□□□□ -0.29
LDLR-205ENST00000557933 CYP26A1O43174 497 aa13.27□□□□□ -0.29
LDLR-205ENST00000557933 RIPK2O43353 540 aa13.27□□□□□ -0.29
LDLR-205ENST00000557933 RARAP10276 462 aa13.27□□□□□ -0.29
LDLR-205ENST00000557933 PPATQ06203 517 aa13.27□□□□□ -0.29
LDLR-205ENST00000557933 SLC47A2Q86VL8 602 aa13.27□□□□□ -0.29
LDLR-205ENST00000557933 HERPUD2Q9BSE4 406 aa13.27□□□□□ -0.29
LDLR-205ENST00000557933 CDC42EP4Q9H3Q1 356 aaKnown RBP13.27□□□□□ -0.29
LDLR-205ENST00000557933 ATF5Q9Y2D1 282 aaPredicted RBP13.27□□□□□ -0.29
LDLR-205ENST00000557933 EMSYQ7Z589 1322 aa13.27□□□□□ -0.29
LDLR-205ENST00000557933 DDTLA6NHG4 134 aaPredicted RBP13.26□□□□□ -0.29
LDLR-205ENST00000557933 CCDC169A6NNP5 214 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 MGRN1O60291 552 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 BBOX1O75936 387 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 CETPP11597 493 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 CHRNB2P17787 502 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 RPL13P26373 211 aaKnown RBP13.26□□□□□ -0.29
LDLR-205ENST00000557933 PSMC2P35998 433 aaKnown RBP13.26□□□□□ -0.29
LDLR-205ENST00000557933 WLSQ5T9L3 541 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 CBWD1Q9BRT8 395 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 KIF9Q9HAQ2 790 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 CHST7Q9NS84 486 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 SWAP70Q9UH65 585 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 RPA1P27694 616 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 PTGIRP43119 386 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 NCALDP61601 193 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 JAG1P78504 1218 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 PPP3CAQ08209 521 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 PLCB4Q15147 1175 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 CNGA2Q16280 664 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 EPM2AIP1Q7L775 607 aaPredicted RBP13.26□□□□□ -0.29
LDLR-205ENST00000557933 FITM2Q8N6M3 262 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 KIFC3Q9BVG8 833 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 TXLNGYQ9BZA5 131 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 DBNDD1Q9H9R9 158 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 ENO4A6NNW6 628 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 SNHG28P0DPA3 235 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 SSR1P43307 286 aaKnown RBP13.26□□□□□ -0.29
LDLR-205ENST00000557933 PSMC4P43686 418 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 ZNF449Q6P9G9 518 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 TBC1D16Q8TBP0 767 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 PLCD4Q9BRC7 762 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 TOPORSQ9NS56 1045 aaPredicted RBP13.26□□□□□ -0.29
LDLR-205ENST00000557933 APEX2Q9UBZ4 518 aa13.26□□□□□ -0.29
LDLR-205ENST00000557933 SORBS3O60504 671 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 GJB6O95452 261 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 PAEPP09466 180 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 TMEM253P0C7T8 217 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 GABPAQ06546 454 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 ERMNQ8TAM6 284 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 STK33Q9BYT3 514 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 C12orf65Q9H3J6 166 aaKnown RBP13.25□□□□□ -0.29
LDLR-205ENST00000557933 AGPAT3Q9NRZ7 376 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 CYP3A4P08684 503 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 LMNB1P20700 586 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 C10orf76Q5T2E6 689 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 LMBRD2Q68DH5 695 aaPredicted RBP13.25□□□□□ -0.29
LDLR-205ENST00000557933 CDC42EP5Q6NZY7 148 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 SPDL1Q96EA4 605 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 SAAL1Q96ER3 474 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 ZNF570Q96NI8 536 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 AGPAT1Q99943 283 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 PI4K2AQ9BTU6 479 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 WDR18Q9BV38 432 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 SLCO1B3Q9NPD5 702 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 GPRC5CQ9NQ84 441 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 NENFQ9UMX5 172 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 FRMD4BQ9Y2L6 1034 aa13.25□□□□□ -0.29
LDLR-205ENST00000557933 SNX3O60493 162 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 NPR1P16066 1061 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 GCFC2P16383 781 aaKnown RBP13.24□□□□□ -0.29
LDLR-205ENST00000557933 KRT17Q04695 432 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 HYIQ5T013 277 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 PPP4R3CPQ6ZMV5 832 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 HS2ST1Q7LGA3 356 aa13.24□□□□□ -0.29
LDLR-205ENST00000557933 NUP85Q9BW27 656 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms