RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 IPO5O00410 1097 aaKnown RBP13.96□□□□□ -0.17
SHMT2-230ENST00000557427 BACH1O14867 736 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 DHX15O43143 795 aaKnown RBP13.96□□□□□ -0.17
SHMT2-230ENST00000557427 LILRB5O75023 590 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 CCNE2O96020 404 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 GBP2P32456 591 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-230ENST00000557427 ALDH7A1P49419 539 aaKnown RBP13.96□□□□□ -0.17
SHMT2-230ENST00000557427 STARD6P59095 220 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 PTPN14Q15678 1187 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 SWSAP1Q6NVH7 229 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 DCLRE1AQ6PJP8 1040 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 TRMT1LQ7Z2T5 733 aaKnown RBP13.96□□□□□ -0.17
SHMT2-230ENST00000557427 DDX53Q86TM3 631 aaKnown RBP13.96□□□□□ -0.17
SHMT2-230ENST00000557427 BLIDQ8IZY5 108 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 RNF169Q8NCN4 708 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 TBCKQ8TEA7 893 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 LEO1Q8WVC0 666 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-230ENST00000557427 NELL1Q92832 810 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 TMEM169Q96HH4 297 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 SPATA32Q96LK8 384 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 ZNF396Q96N95 335 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-230ENST00000557427 KLHL5Q96PQ7 755 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 WDR6Q9NNW5 1121 aaKnown RBP13.96□□□□□ -0.17
SHMT2-230ENST00000557427 GJB4Q9NTQ9 266 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 ORC3Q9UBD5 711 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-230ENST00000557427 FBXO4Q9UKT5 387 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 USP18Q9UMW8 372 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 MTF2Q9Y483 593 aaPredicted RBP13.96□□□□□ -0.17
SHMT2-230ENST00000557427 PCDHGA2Q9Y5H1 932 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 FRYQ5TBA9 3013 aa13.96□□□□□ -0.17
SHMT2-230ENST00000557427 PATJQ8NI35 1801 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 SYCE3A1L190 88 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 EDIL3O43854 480 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 LILRB3O75022 631 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 ATG7O95352 703 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 VTNP04004 478 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 CNPP09543 421 aaKnown RBP13.95□□□□□ -0.18
SHMT2-230ENST00000557427 USP11P51784 963 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 POLGP54098 1239 aaPredicted RBP13.95□□□□□ -0.18
SHMT2-230ENST00000557427 CSTF1Q05048 431 aaKnown RBP13.95□□□□□ -0.18
SHMT2-230ENST00000557427 GIT2Q14161 759 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 BMS1Q14692 1282 aaKnown RBP13.95□□□□□ -0.18
SHMT2-230ENST00000557427 ACAP1Q15027 740 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 FAM173BQ6P4H8 233 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 ABHD15Q6UXT9 468 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 PPFIBP1Q86W92 1011 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 GJA10Q969M2 543 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 BORCS6Q96GS4 357 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 IGSF21Q96ID5 467 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 C8orf76Q96K31 380 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 SLC2A4RGQ9NR83 387 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 TBC1D22BQ9NU19 505 aa13.95□□□□□ -0.18
SHMT2-230ENST00000557427 IGKV6D-21A0A0A0MT36 114 aa13.94□□□□□ -0.18
SHMT2-230ENST00000557427 ANHXE9PGG2 379 aa13.94□□□□□ -0.18
SHMT2-230ENST00000557427 SLC30A4O14863 429 aa13.94□□□□□ -0.18
SHMT2-230ENST00000557427 ATP4AP20648 1035 aa13.94□□□□□ -0.18
SHMT2-230ENST00000557427 CIITAP33076 1130 aa13.94□□□□□ -0.18
SHMT2-230ENST00000557427 NONOQ15233 471 aaKnown RBP eCLIP13.94□□□□□ -0.18
SHMT2-230ENST00000557427 MIS18BP1Q6P0N0 1132 aa13.94□□□□□ -0.18
SHMT2-230ENST00000557427 FBXO18Q8NFZ0 1043 aa13.94□□□□□ -0.18
SHMT2-230ENST00000557427 ATRIPQ8WXE1 791 aa13.94□□□□□ -0.18
SHMT2-230ENST00000557427 RPP25Q9BUL9 199 aaKnown RBP13.94□□□□□ -0.18
SHMT2-230ENST00000557427 SPATA6Q9NWH7 488 aaPredicted RBP13.94□□□□□ -0.18
SHMT2-230ENST00000557427 TCEAL9Q9UHQ7 104 aa13.94□□□□□ -0.18
SHMT2-230ENST00000557427 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.94□□□□□ -0.18
SHMT2-230ENST00000557427 SPEGQ15772 3267 aa13.94□□□□□ -0.18
SHMT2-230ENST00000557427 CLUHO75153 1309 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 A0A0U1RQF3 1178 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 CCDC195A0A1B0GUA6 201 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 SPDYE4A6NLX3 237 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 MSH4O15457 936 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 LAMTOR5O43504 91 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 HBP1O60381 514 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 B4GALT3O60512 393 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 ZC3H11AO75152 810 aaKnown RBP eCLIP13.93□□□□□ -0.18
SHMT2-230ENST00000557427 C22orf31O95567 290 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 GALTP07902 379 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 XBP1P17861 261 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 KLRC2P26717 231 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 NASPP49321 788 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-230ENST00000557427 FOSBP53539 338 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 SETQ01105 290 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-230ENST00000557427 INF2Q27J81 1249 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 FAM160B1Q5W0V3 765 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 GALNT17Q6IS24 598 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 PDXDC2PQ6P474 469 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 TSSK4Q6SA08 328 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 BRAPQ7Z569 592 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 CKAP2LQ8IYA6 745 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 CMASQ8NFW8 434 aaPredicted RBP13.93□□□□□ -0.18
SHMT2-230ENST00000557427 NXPE3Q969Y0 559 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 DDX23Q9BUQ8 820 aaKnown RBP13.93□□□□□ -0.18
SHMT2-230ENST00000557427 PANK2Q9BZ23 570 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 TSPY26PQ9H489 355 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 NRDE2Q9H7Z3 1164 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 ZNF302Q9NR11 478 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 ZSCAN32Q9NX65 697 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 TFIP11Q9UBB9 837 aaKnown RBP13.93□□□□□ -0.18
SHMT2-230ENST00000557427 RCOR1Q9UKL0 485 aa13.93□□□□□ -0.18
SHMT2-230ENST00000557427 SAMM50Q9Y512 469 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms