RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ABHD14A-ACY1A0A1B0GW23 586 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 C9IYK1 514 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 TGFB1I1O43294 461 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 PROZP22891 400 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 AXLP30530 894 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 PRCPP42785 496 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 DEFB103AP81534 67 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 ALCAMQ13740 583 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 SHHQ15465 462 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 NOTUMQ6P988 496 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 ZPBP2Q6X784 338 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 ZBTB33Q86T24 672 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 MYOCDQ8IZQ8 938 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 FTHL17Q9BXU8 183 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 TNFSF13BQ9Y275 285 aa14.06□□□□□ -0.16
SHMT2-227ENST00000557269 PPP1R3GB7ZBB8 358 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 HNRNPDLO14979 420 aaKnown RBP14.05□□□□□ -0.16
SHMT2-227ENST00000557269 N4BP3O15049 544 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 NPTXRO95502 500 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 ZSCAN20P17040 1043 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-227ENST00000557269 IBSPP21815 317 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-227ENST00000557269 SCP2P22307 547 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 ADSSP30520 456 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 LIG4P49917 911 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 WDR5P61964 334 aaKnown RBP14.05□□□□□ -0.16
SHMT2-227ENST00000557269 NCBP1Q09161 790 aaKnown RBP14.05□□□□□ -0.16
SHMT2-227ENST00000557269 KNOP1Q1ED39 458 aaKnown RBP14.05□□□□□ -0.16
SHMT2-227ENST00000557269 TMEM132AQ24JP5 1023 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 SKOR2Q2VWA4 1001 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-227ENST00000557269 RASIP1Q5U651 963 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 TWF2Q6IBS0 349 aaKnown RBP14.05□□□□□ -0.16
SHMT2-227ENST00000557269 PSRC1Q6PGN9 363 aaPredicted RBP14.05□□□□□ -0.16
SHMT2-227ENST00000557269 STXBP4Q6ZWJ1 553 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 SYCP3Q8IZU3 236 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 CRIPAKQ8N1N5 446 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 SMG8Q8ND04 991 aaKnown RBP14.05□□□□□ -0.16
SHMT2-227ENST00000557269 HERVK_113Q902F9 699 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 BICD1Q96G01 975 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 UBE2OQ9C0C9 1292 aaKnown RBP14.05□□□□□ -0.16
SHMT2-227ENST00000557269 CDT1Q9H211 546 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 KCTD10Q9H3F6 313 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 ANKFY1Q9P2R3 1169 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 HES2Q9Y543 173 aa14.05□□□□□ -0.16
SHMT2-227ENST00000557269 MEIS3P2A8K0S8 358 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 TOM1L1O75674 476 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 BAIAP3O94812 1187 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 ACTN1P12814 892 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 ATF7P17544 494 aaPredicted RBP14.04□□□□□ -0.16
SHMT2-227ENST00000557269 ABCD1P33897 745 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 FAM189BP81408 668 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 SEZ6Q53EL9 994 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 ZBTB41Q5SVQ8 909 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 SLC27A1Q6PCB7 646 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 MPZL3Q6UWV2 235 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 SLC24A5Q71RS6 500 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 ADSSL1Q8N142 457 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 GUF1Q8N442 669 aaKnown RBP14.04□□□□□ -0.16
SHMT2-227ENST00000557269 CEP120Q8N960 986 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 TRIML1Q8N9V2 468 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 ZSWIM2Q8NEG5 633 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 TRAIPQ9BWF2 469 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 RNF39Q9H2S5 420 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 PRO3102Q9H379 93 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 SEMA6BQ9H3T3 888 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 TMEM206Q9H813 350 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 FAM105AQ9NUU6 356 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 EXOC7Q9UPT5 735 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 PCDHB2Q9Y5E7 798 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 STYXL1Q9Y6J8 313 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 UBE4BO95155 1302 aa14.04□□□□□ -0.16
SHMT2-227ENST00000557269 MICAL3Q7RTP6 2002 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 A0A0B4J269 797 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 A0A0U1RQF3 1178 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 ZBBXA8MT70 800 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 MEFVO15553 781 aaPredicted RBP14.03□□□□□ -0.16
SHMT2-227ENST00000557269 HARSP12081 509 aaKnown RBP14.03□□□□□ -0.16
SHMT2-227ENST00000557269 PMS1P54277 932 aaKnown RBP14.03□□□□□ -0.16
SHMT2-227ENST00000557269 MCL1Q07820 350 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 DPCR1Q3MIW9 517 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 ZNF568Q3ZCX4 644 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 COBLL1Q53SF7 1204 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 MRPL10Q7Z7H8 261 aaKnown RBP14.03□□□□□ -0.16
SHMT2-227ENST00000557269 ZNF598Q86UK7 904 aaKnown RBP14.03□□□□□ -0.16
SHMT2-227ENST00000557269 ECHDC2Q86YB7 292 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 TMEM192Q8IY95 271 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 LPPQ93052 612 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 CCDC51Q96ER9 411 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 CBWD1Q9BRT8 395 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 TCHPQ9BT92 498 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 GBP3Q9H0R5 595 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 CXCL16Q9H2A7 254 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 NXF3Q9H4D5 531 aaKnown RBP14.03□□□□□ -0.16
SHMT2-227ENST00000557269 AGPAT3Q9NRZ7 376 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 C1orf112Q9NSG2 853 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 IPPQ9Y573 584 aa14.03□□□□□ -0.16
SHMT2-227ENST00000557269 CLIC2O15247 247 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 CLDN3O15551 220 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 FAM189A1O60320 539 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 ZNF623O75123 536 aa14.02□□□□□ -0.17
SHMT2-227ENST00000557269 UPP2O95045 317 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms