RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 ADPGKQ9BRR6 497 aa15.39■□□□□ 0.05
VIPAS39-208ENST00000556412 EIF2AQ9BY44 585 aaKnown RBP15.39■□□□□ 0.05
VIPAS39-208ENST00000556412 A0A1B0GUA9 196 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 ENPP3O14638 875 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 KIF20AO95235 890 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 MORC3Q14149 939 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 DSC3Q14574 896 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 C9orf50Q5SZB4 431 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 ZPBP2Q6X784 338 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 RTN4RL1Q86UN2 441 aaPredicted RBP15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 ZNF507Q8TCN5 953 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 ZBTB45Q96K62 511 aaPredicted RBP15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 RGS18Q9NS28 235 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 TNFSF13BQ9Y275 285 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 ANKRD63C9JTQ0 380 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 TULP1O00294 542 aaPredicted RBP15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 CLDN3O15551 220 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 TOM1L1O75674 476 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 BAIAP3O94812 1187 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 KNOP1Q1ED39 458 aaKnown RBP15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 MPZL3Q6UWV2 235 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 SLC24A5Q71RS6 500 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 NOC3LQ8WTT2 800 aaKnown RBP15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 CCDC51Q96ER9 411 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 RNPC3Q96LT9 517 aaKnown RBP15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 GDF15Q99988 308 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 APOL6Q9BWW8 343 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 TSPYL2Q9H2G4 693 aaPredicted RBP15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 MTIF3Q9H2K0 278 aaKnown RBP15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 FAM105AQ9NUU6 356 aa15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 CXXC1Q9P0U4 656 aaPredicted RBP15.38■□□□□ 0.05
VIPAS39-208ENST00000556412 UBE4BO95155 1302 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 EFCAB14O75071 495 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 UPP2O95045 317 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 AMHP03971 560 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 BMP6P22004 513 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 HOXD13P35453 343 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 PRCPP42785 496 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 WDR5P61964 334 aaKnown RBP15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 STIM1Q13586 685 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 SHHQ15465 462 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 BMT2Q1RMZ1 405 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 UBXN11Q5T124 520 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 KLHL10Q6JEL2 608 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 FAM117BQ6P1L5 589 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 SASS6Q6UVJ0 657 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 CHRDL2Q6WN34 429 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 APBB1IPQ7Z5R6 666 aaPredicted RBP15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 TMCO2Q7Z6W1 182 aaPredicted RBP15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 TRIML1Q8N9V2 468 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 KCNN1Q92952 543 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 GTPBP4Q9BZE4 634 aaKnown RBP15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 GBP3Q9H0R5 595 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 C1orf112Q9NSG2 853 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 LRFN2Q9ULH4 789 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 HES2Q9Y543 173 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 PCDHB2Q9Y5E7 798 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 TANC1Q9C0D5 1861 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 ZMYM2Q9UBW7 1377 aa15.37■□□□□ 0.05
VIPAS39-208ENST00000556412 PIGRP01833 764 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 OSTNP61366 133 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 DEFB103AP81534 67 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 ARMCX5Q6P1M9 558 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 SLC39A4Q6P5W5 647 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 HS2ST1Q7LGA3 356 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 THNSL1Q8IYQ7 743 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 GUF1Q8N442 669 aaKnown RBP15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 POMGNT1Q8WZA1 660 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 HERVK_113Q902F9 699 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 MSTO1Q9BUK6 570 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 CDT1Q9H211 546 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 SLC4A7Q9Y6M7 1214 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 EVPLQ92817 2033 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 A0A0U1RQF3 1178 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 C9IYK1 514 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 RAB27AP51159 221 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 NOLC1Q14978 699 aaKnown RBP eCLIP15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 DCAF4L1Q3SXM0 396 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 SEZ6Q53EL9 994 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 ECHDC2Q86YB7 292 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 LPPQ93052 612 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 NXF3Q9H4D5 531 aaKnown RBP15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 PCIF1Q9H4Z3 704 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 PTPRHQ9HD43 1115 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 IPPQ9Y573 584 aa15.36■□□□□ 0.05
VIPAS39-208ENST00000556412 CLIC2O15247 247 aa15.35■□□□□ 0.05
VIPAS39-208ENST00000556412 TGFB1I1O43294 461 aa15.35■□□□□ 0.05
VIPAS39-208ENST00000556412 SKIP12755 728 aa15.35■□□□□ 0.05
VIPAS39-208ENST00000556412 CD44P16070 742 aaKnown RBP15.35■□□□□ 0.05
VIPAS39-208ENST00000556412 PROZP22891 400 aa15.35■□□□□ 0.05
VIPAS39-208ENST00000556412 DPCR1Q3MIW9 517 aa15.35■□□□□ 0.05
VIPAS39-208ENST00000556412 SLFN12LQ6IEE8 588 aa15.35■□□□□ 0.05
VIPAS39-208ENST00000556412 RBM43Q6ZSC3 357 aaKnown RBP15.35■□□□□ 0.05
VIPAS39-208ENST00000556412 ADSSL1Q8N142 457 aa15.35■□□□□ 0.05
VIPAS39-208ENST00000556412 CEP120Q8N960 986 aa15.35■□□□□ 0.05
VIPAS39-208ENST00000556412 CBWD1Q9BRT8 395 aa15.35■□□□□ 0.05
VIPAS39-208ENST00000556412 AGPAT3Q9NRZ7 376 aa15.35■□□□□ 0.05
VIPAS39-208ENST00000556412 CTNND2Q9UQB3 1225 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms