RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 HCSTQ9UBK5 93 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 ODF2LQ9ULJ1 636 aa22.75■■□□□ 1.23
CCDC88C-210ENST00000555995 NPTXRO95502 500 aa22.74■■□□□ 1.23
CCDC88C-210ENST00000555995 NPTX2P47972 431 aa22.74■■□□□ 1.23
CCDC88C-210ENST00000555995 COL19A1Q14993 1142 aa22.74■■□□□ 1.23
CCDC88C-210ENST00000555995 SLC39A14Q15043 492 aa22.74■■□□□ 1.23
CCDC88C-210ENST00000555995 LONRF3Q496Y0 759 aa22.74■■□□□ 1.23
CCDC88C-210ENST00000555995 SPIRE2Q8WWL2 714 aa22.74■■□□□ 1.23
CCDC88C-210ENST00000555995 CDCA3Q99618 268 aaPredicted RBP22.74■■□□□ 1.23
CCDC88C-210ENST00000555995 TMEM175Q9BSA9 504 aa22.74■■□□□ 1.23
CCDC88C-210ENST00000555995 NGRNQ9NPE2 291 aaKnown RBP22.74■■□□□ 1.23
CCDC88C-210ENST00000555995 STK17AQ9UEE5 414 aa22.74■■□□□ 1.23
CCDC88C-210ENST00000555995 UNC80Q8N2C7 3258 aa22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 MEIS3P2A8K0S8 358 aa22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 PLCG1P19174 1290 aa22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 NASPP49321 788 aaPredicted RBP22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 CAMK1Q14012 370 aa22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 STK38Q15208 465 aa22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 PUS10Q3MIT2 529 aaKnown RBP22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 DAW1Q8N136 415 aa22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 KRI1Q8N9T8 703 aaKnown RBP22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 MICAL1Q8TDZ2 1067 aa22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 USP28Q96RU2 1077 aa22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 PLIN2Q99541 437 aa22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 ARHGAP28Q9P2N2 729 aa22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 FBXO2Q9UK22 296 aaPredicted RBP22.73■■□□□ 1.23
CCDC88C-210ENST00000555995 NR1I2O75469 434 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 ZSCAN22P10073 491 aaPredicted RBP22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 PLS3P13797 630 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 LIG1P18858 919 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 DNAJB1P25685 340 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 MARCKSP29966 332 aaPredicted RBP22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 ABCD1P33897 745 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 CEBPZQ03701 1054 aaKnown RBP22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 MAPK7Q13164 816 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 KARSQ15046 597 aaKnown RBP22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 FAM173BQ6P4H8 233 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 LARP4BQ92615 738 aaKnown RBP22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 RAD54LQ92698 747 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 RPS6KC1Q96S38 1066 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 NXF3Q9H4D5 531 aaKnown RBP22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 PDZD7Q9H5P4 517 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 NRDE2Q9H7Z3 1164 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 ENTPD7Q9NQZ7 604 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 FAM50BQ9Y247 325 aa22.72■■□□□ 1.23
CCDC88C-210ENST00000555995 ARL5CA6NH57 179 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 YEATS4O95619 227 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 SRGAP2BP0DMP2 458 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 GRIN1Q05586 938 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 STRN3Q13033 797 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 LEXMQ3ZCV2 418 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 ATF7IP2Q5U623 682 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 ATL3Q6DD88 541 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 GPBP1Q86WP2 473 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 NTPCRQ9BSD7 190 aaKnown RBP22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 KIFC3Q9BVG8 833 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 APOL6Q9BWW8 343 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 MRPL4Q9BYD3 311 aaKnown RBP22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 GBP3Q9H0R5 595 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 CLDND1Q9NY35 253 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 MYO7AQ13402 2215 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 BRWD1Q9NSI6 2320 aa22.71■■□□□ 1.23
CCDC88C-210ENST00000555995 DLL1O00548 723 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 FSCN2O14926 492 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 CSPG5O95196 566 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 F13A1P00488 732 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 KRT18P05783 430 aaKnown RBP22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 GALTP07902 379 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 KCNA5P22460 613 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 MLH1P40692 756 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 TFF2Q03403 129 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 HYAL1Q12794 435 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 GRIK3Q13003 919 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 GIT2Q14161 759 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 IGSF21Q96ID5 467 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 GAD1Q99259 594 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 TCF25Q9BQ70 676 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 PARP2Q9UGN5 583 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 TNFSF13BQ9Y275 285 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 HES2Q9Y543 173 aa22.7■■□□□ 1.22
CCDC88C-210ENST00000555995 REV3LO60673 3130 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 PPP6R2O75170 966 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 TBCAO75347 108 aaKnown RBP22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 ALDH2P05091 517 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 IRS1P35568 1242 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 PBX3P40426 434 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 SMC1AQ14683 1233 aaKnown RBP22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 CCDC73Q6ZRK6 1079 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 EP400NLQ6ZTU2 488 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 TMC7Q7Z402 723 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 CDR2LQ86X02 465 aaPredicted RBP22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 EFHBQ8N7U6 833 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 LINC00301Q8NCQ3 95 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 COL25A1Q9BXS0 654 aaPredicted RBP22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 TLE6Q9H808 572 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 POLD4Q9HCU8 107 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 BLOC1S4Q9NUP1 217 aa22.69■■□□□ 1.22
CCDC88C-210ENST00000555995 SPTLC2O15270 562 aa22.68■■□□□ 1.22
CCDC88C-210ENST00000555995 FAM13AO94988 1023 aa22.68■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms