RNA–Protein interactions for RNA: ENST00000554604.5

SHMT2-214, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-214ENST00000554604 PUS10Q3MIT2 529 aaKnown RBP13.73□□□□□ -0.21
SHMT2-214ENST00000554604 PTCRAQ6ISU1 281 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-214ENST00000554604 POTEGQ6S5H5 508 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 LRRC55Q6ZSA7 311 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 MAEAQ7L5Y9 396 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 KRI1Q8N9T8 703 aaKnown RBP13.73□□□□□ -0.21
SHMT2-214ENST00000554604 MCPH1Q8NEM0 835 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 RSPH1Q8WYR4 309 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 LPPQ93052 612 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 POLR3FQ9H1D9 316 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-214ENST00000554604 TLR9Q9NR96 1032 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 SPG21Q9NZD8 308 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 LRWD1Q9UFC0 647 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 DBR1Q9UK59 544 aaKnown RBP13.73□□□□□ -0.21
SHMT2-214ENST00000554604 FAM50BQ9Y247 325 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 INPP5FQ9Y2H2 1132 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 PCDHB6Q9Y5E3 794 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 PCDHB2Q9Y5E7 798 aa13.73□□□□□ -0.21
SHMT2-214ENST00000554604 MYH11P35749 1972 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 ARHGEF35A5YM69 484 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 LAD1O00515 517 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 ZNF623O75123 536 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 ZNF202O95125 648 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 GTF2F1P35269 517 aaKnown RBP eCLIP13.72□□□□□ -0.21
SHMT2-214ENST00000554604 IRS1P35568 1242 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 ARL2P36404 184 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 PBX3P40426 434 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 FXR2P51116 673 aaKnown RBP eCLIP13.72□□□□□ -0.21
SHMT2-214ENST00000554604 POU5F1BQ06416 359 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 CAPSQ13938 189 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 PDIA5Q14554 519 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 COL19A1Q14993 1142 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 PDE12Q6L8Q7 609 aaKnown RBP13.72□□□□□ -0.21
SHMT2-214ENST00000554604 SHC4Q6S5L8 630 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 RBM23Q86U06 439 aaKnown RBP13.72□□□□□ -0.21
SHMT2-214ENST00000554604 ELOA2Q8IYF1 753 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-214ENST00000554604 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-214ENST00000554604 ASAP3Q8TDY4 903 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 TLE6Q9H808 572 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 CBX8Q9HC52 389 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 ANO10Q9NW15 660 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 CCDC39Q9UFE4 941 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 USP25Q9UHP3 1055 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 FBXO2Q9UK22 296 aaPredicted RBP13.72□□□□□ -0.21
SHMT2-214ENST00000554604 LZTS1Q9Y250 596 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 STK24Q9Y6E0 443 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 C5orf42Q9H799 3197 aa13.72□□□□□ -0.21
SHMT2-214ENST00000554604 LRRIQ4A6NIV6 560 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 ESPNB1AK53 854 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 ZC3H11AO75152 810 aaKnown RBP eCLIP13.71□□□□□ -0.21
SHMT2-214ENST00000554604 MUTP22033 750 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 GLRA2P23416 452 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 AXLP30530 894 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 HOXA11P31270 313 aaPredicted RBP13.71□□□□□ -0.21
SHMT2-214ENST00000554604 SYKP43405 635 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 NRIP1P48552 1158 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 NDUFV1P49821 464 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 PLCB3Q01970 1234 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 CTC1Q2NKJ3 1217 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 NOMO2Q5JPE7 1267 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 NOTUMQ6P988 496 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 PADI6Q6TGC4 694 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 ADGRD2Q7Z7M1 963 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 C4orf32Q8N8J7 132 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 URGCPQ8TCY9 931 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 GPRC5CQ9NQ84 441 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 ENTPD7Q9NQZ7 604 aa13.71□□□□□ -0.21
SHMT2-214ENST00000554604 SRPRBQ9Y5M8 271 aaKnown RBP13.71□□□□□ -0.21
SHMT2-214ENST00000554604 CNTNAP2Q9UHC6 1331 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 CARNS1A5YM72 827 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 GRXCR2A6NFK2 248 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 MEIS3P2A8K0S8 358 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 LINC01565O15544 149 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 TSPAN1O60635 241 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 ADCY5O95622 1261 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 ZNF165P49910 485 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 BCAR1P56945 870 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 ERVFC1P60507 584 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 MBTD1Q05BQ5 628 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 BMS1Q14692 1282 aaKnown RBP13.7□□□□□ -0.22
SHMT2-214ENST00000554604 CLUL1Q15846 466 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 PLPP4Q5VZY2 271 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 KRT79Q5XKE5 535 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 DTHD1Q6ZMT9 781 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 TMC7Q7Z402 723 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 ZSCAN30Q86W11 494 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 IFNLR1Q8IU57 520 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-214ENST00000554604 EFHBQ8N7U6 833 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 CNNM3Q8NE01 707 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 SNX29Q8TEQ0 813 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 CCDC51Q96ER9 411 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 TMEM169Q96HH4 297 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 CPB2Q96IY4 423 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 TCF25Q9BQ70 676 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 NFKBIZQ9BYH8 718 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 TRIM6Q9C030 488 aaPredicted RBP13.7□□□□□ -0.22
SHMT2-214ENST00000554604 GBP3Q9H0R5 595 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 RSAD1Q9HA92 442 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 TBC1D13Q9NVG8 400 aa13.7□□□□□ -0.22
SHMT2-214ENST00000554604 FAM13BQ9NYF5 915 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms