RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 DPP9Q86TI2 863 aa13.85□□□□□ -0.19
VIPAS39-206ENST00000553888 NPLOC4Q8TAT6 608 aa13.85□□□□□ -0.19
VIPAS39-206ENST00000553888 NAPGQ99747 312 aaPredicted RBP13.85□□□□□ -0.19
VIPAS39-206ENST00000553888 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.85□□□□□ -0.19
VIPAS39-206ENST00000553888 MORF4L1Q9UBU8 362 aa13.85□□□□□ -0.19
VIPAS39-206ENST00000553888 TRPC6Q9Y210 931 aa13.85□□□□□ -0.19
VIPAS39-206ENST00000553888 MGAMO43451 1857 aa13.85□□□□□ -0.19
VIPAS39-206ENST00000553888 F8VZ95 297 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 ADCY6O43306 1168 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 LGR5O75473 907 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 NLRP11P59045 1033 aaKnown RBP13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 SCFD2Q8WU76 684 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 NUCKS1Q9H1E3 243 aaKnown RBP13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 EVI5O60447 810 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 MAFO75444 373 aaPredicted RBP13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 ZNF157P51786 506 aaPredicted RBP13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 SCARA3Q6AZY7 606 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 EHBP1Q8NDI1 1231 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 SLC17A8Q8NDX2 589 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 PARD3BQ8TEW8 1205 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 HVCN1Q96D96 273 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 KATNBL1Q9H079 304 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 APEX2Q9UBZ4 518 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 SLC45A1Q9Y2W3 748 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 CEP350Q5VT06 3117 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 K7ERI5 159 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 ZBTB48P10074 688 aaPredicted RBP13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 NAMPTP43490 491 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 GCLCP48506 637 aaPredicted RBP13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 MXI1P50539 228 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 CLCN3P51790 818 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 SLC18A3Q16572 532 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 EPC2Q52LR7 807 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 PRAMEF19Q5SWL8 479 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 MNS1Q8NEH6 495 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 ATP8B4Q8TF62 1192 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 AFG1LQ8WV93 481 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 PARK7Q99497 189 aaKnown RBP13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 UBE2TQ9NPD8 197 aaPredicted RBP13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 CGNQ9P2M7 1197 aaKnown RBP13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 KAT6AQ92794 2004 aa13.84□□□□□ -0.19
VIPAS39-206ENST00000553888 UNCXA6NJT0 531 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 IRX5P78411 483 aaPredicted RBP13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 CYP24A1Q07973 514 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 STRN3Q13033 797 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 BRDTQ58F21 947 aaPredicted RBP13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 KCNV1Q6PIU1 500 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 GPD1LQ8N335 351 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 OLIG1Q8TAK6 271 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 ANKRD7Q92527 254 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 PI4K2AQ9BTU6 479 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 ACP6Q9NPH0 428 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 DIS3Q9Y2L1 958 aaKnown RBP13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 FOXN3O00409 490 aaPredicted RBP13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 TADA3O75528 432 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 CSDE1O75534 798 aaKnown RBP13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 RFC5P40937 340 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 MATR3P43243 847 aaKnown RBP eCLIP13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 AMPD2Q01433 879 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 CDR2LQ86X02 465 aaPredicted RBP13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 RASAL3Q86YV0 1011 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 TAS1R2Q8TE23 839 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 GTF3C2Q8WUA4 911 aaPredicted RBP13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 TMEM174Q8WUU8 243 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 LENG1Q96BZ8 264 aaPredicted RBP13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 MAML3Q96JK9 1138 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 PTPRJQ12913 1337 aa13.83□□□□□ -0.2
VIPAS39-206ENST00000553888 KLRC1P26715 233 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 SOX5P35711 763 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 LAMTOR4Q0VGL1 99 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 GRB14Q14449 540 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 RHPN2Q8IUC4 686 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 METTL13Q8N6R0 699 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 RNF149Q8NC42 400 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 FBXL18Q96ME1 805 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 PSMB7Q99436 277 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 FBXL5Q9UKA1 691 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 TMCO5BA8MYB1 307 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 ZNF185O15231 689 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 NCK2O43639 380 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 CALCAP01258 141 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 LGALS2P05162 132 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 CRELD2Q6UXH1 353 aaPredicted RBP13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 ZNF662Q6ZS27 426 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 PLPPR4Q7Z2D5 763 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 ZBTB33Q86T24 672 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 PALB2Q86YC2 1186 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 LNX1Q8TBB1 728 aaPredicted RBP13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 ZNF516Q92618 1163 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 MFSD14AQ96MC6 490 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 NLRP4Q96MN2 994 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 STK33Q9BYT3 514 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 PDE11AQ9HCR9 933 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 MYO1AQ9UBC5 1043 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 CDC23Q9UJX2 597 aa13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 ZHX1Q9UKY1 873 aaPredicted RBP13.82□□□□□ -0.2
VIPAS39-206ENST00000553888 DDX3XO00571 662 aaKnown RBP eCLIP13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 SMPD1P17405 629 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 STAT1P42224 750 aa13.81□□□□□ -0.2
VIPAS39-206ENST00000553888 CHMP4BP1P59074 171 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms