RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 EPC2Q52LR7 807 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 LDHDQ86WU2 507 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 EPS8L3Q8TE67 593 aaKnown RBP8.08□□□□□ -1.12
LIMA1-213ENST00000552720 SEMA4DQ92854 862 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 TLCD1Q96CP7 247 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 SEC16BQ96JE7 1060 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 KREMEN1Q96MU8 473 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 ZSWIM1Q9BR11 485 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 KIFC3Q9BVG8 833 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 MTFR1LQ9H019 292 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 AZI2Q9H6S1 392 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 ARHGEF10LQ9HCE6 1279 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 KCNH7Q9NS40 1196 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 ZHX2Q9Y6X8 837 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 UBE4BO95155 1302 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 GOLGA6L10A0A0M3HER8 536 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 SLC16A4O15374 487 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 PHF2O75151 1096 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 BCRP11274 1271 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 CHN1P15882 459 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 PEX5P50542 639 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 MAP2K1Q02750 393 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-213ENST00000552720 ACTN3Q08043 901 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-213ENST00000552720 UGCGQ16739 394 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 CCDC38Q502W7 563 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 CC2D2BQ6DHV5 1058 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 CCDC137Q6PK04 289 aaKnown RBP8.08□□□□□ -1.12
LIMA1-213ENST00000552720 MICALCLQ6ZW33 695 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 STXBP4Q6ZWJ1 553 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 MIER3Q7Z3K6 550 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 SLC9A9Q8IVB4 645 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 SUGP1Q8IWZ8 645 aaKnown RBP8.08□□□□□ -1.12
LIMA1-213ENST00000552720 PPM1KQ8N3J5 372 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 EPS8L1Q8TE68 723 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 CCDC127Q96BQ5 260 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 SAAL1Q96ER3 474 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 SELENOSQ9BQE4 189 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 MXRA8Q9BRK3 442 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 TMEM117Q9H0C3 514 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 ADAM7Q9H2U9 754 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 TOPORSQ9NS56 1045 aaPredicted RBP8.08□□□□□ -1.12
LIMA1-213ENST00000552720 HSPBP1Q9NZL4 362 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 NOCTQ9UK39 431 aaKnown RBP8.08□□□□□ -1.12
LIMA1-213ENST00000552720 TRPC6Q9Y210 931 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 SPATA31A6Q5VVP1 1343 aa8.08□□□□□ -1.12
LIMA1-213ENST00000552720 FER1L6Q2WGJ9 1857 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 FOXO6A8MYZ6 492 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 DHX15O43143 795 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 CCDC172P0C7W6 258 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 RARRES1P49788 294 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 MNAT1P51948 309 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 PEX3P56589 373 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 GPC5P78333 572 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 NBPF9Q3BBW0 867 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 PLA2G4FQ68DD2 849 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 YTHDF3Q7Z739 585 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 PHLDB2Q86SQ0 1253 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 SPATS2Q86XZ4 545 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 CBWD2Q8IUF1 395 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 NEK9Q8TD19 979 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 DHX38Q92620 1227 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 TATDN2Q93075 761 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 CABS1Q96KC9 395 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 PABPC3Q9H361 631 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 VCPKMTQ9H867 229 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 HOMER2Q9NSB8 354 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 ZBTB12Q9Y330 459 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 PCDHA3Q9Y5H8 950 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 SYNGAP1Q96PV0 1343 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 PSME4Q14997 1843 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 MYH9P35579 1960 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 CTNND1O60716 968 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 PAEPP09466 180 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 RARAP10276 462 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 DRD4P21917 467 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 CTNNA2P26232 953 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 SOX10P56693 466 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 FKBP1AP62942 108 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 C2CD6Q53TS8 623 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 DAB2IPQ5VWQ8 1189 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 LLGL2Q6P1M3 1020 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 INTS8Q75QN2 995 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 HAUS6Q7Z4H7 955 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 CPLX4Q7Z7G2 160 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 CCDC25Q86WR0 208 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 RHOT2Q8IXI1 618 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 CPXCR1Q8N123 301 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 XXYLT1Q8NBI6 393 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 XPO6Q96QU8 1125 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 JPH2Q9BR39 696 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 NUP85Q9BW27 656 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 TMEM39BQ9GZU3 492 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 VEZTQ9HBM0 779 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 CD248Q9HCU0 757 aa8.07□□□□□ -1.12
LIMA1-213ENST00000552720 DBR1Q9UK59 544 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 TRPC5Q9UL62 973 aaPredicted RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 DIS3Q9Y2L1 958 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 MRPL11Q9Y3B7 192 aaKnown RBP8.07□□□□□ -1.12
LIMA1-213ENST00000552720 CNTNAP1P78357 1384 aa8.06□□□□□ -1.12
LIMA1-213ENST00000552720 GOLGA6L7A0A1B0GV03 622 aa8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms