RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 HSP90AB4PQ58FF6 505 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 SLC35F1Q5T1Q4 408 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 NXNQ6DKJ4 435 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 IQCEQ6IPM2 695 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 PGM2L1Q6PCE3 622 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 CRTC3Q6UUV7 619 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 RSPO2Q6UXX9 243 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-208ENST00000551691 NLRX1Q86UT6 975 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 NBPF5PQ86XG9 351 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-208ENST00000551691 MAGEB6Q8N7X4 407 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 NAT16Q8N8M0 369 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 CHST14Q8NCH0 376 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 FEZF2Q8TBJ5 459 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 DIO2Q92813 273 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 CDCA5Q96FF9 252 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 TCTN2Q96GX1 697 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 ZNF333Q96JL9 665 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 GUCD1Q96NT3 240 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 MENTQ9BUN1 341 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 HDAC8Q9BY41 377 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 GPR27Q9NS67 375 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 CATSPERZQ9NTU4 200 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 MBD1Q9UIS9 605 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-208ENST00000551691 ZNF831Q5JPB2 1677 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 CACNA1AO00555 2505 aa4.66□□□□□ -1.66
LIMA1-208ENST00000551691 TONSLQ96HA7 1378 aa4.65□□□□□ -1.66
LIMA1-208ENST00000551691 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-208ENST00000551691 OTOL1A6NHN0 477 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-208ENST00000551691 YDJCA8MPS7 323 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 VSTM5A8MXK1 200 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 FAM47E-STBD1D6RA91 191 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 H7C1D1 291 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 RFXAPO00287 272 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 RFPL1O75677 317 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 KRT37O76014 449 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 IL33O95760 270 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 PF4V1P10720 104 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 VCAM1P19320 739 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 ALDH1B1P30837 517 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 VIPR1P32241 457 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 RECQLP46063 649 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-208ENST00000551691 PRKG1Q13976 671 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 ACAP2Q15057 778 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 ZNF174Q15697 407 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 CRY1Q16526 586 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 TMEM177Q53S58 311 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 ACBD5Q5T8D3 534 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-208ENST00000551691 E4F1Q66K89 784 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-208ENST00000551691 CISD2Q8N5K1 135 aaKnown RBP4.65□□□□□ -1.67
LIMA1-208ENST00000551691 SYT8Q8NBV8 401 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 DCPSQ96C86 337 aaKnown RBP4.65□□□□□ -1.67
LIMA1-208ENST00000551691 CLIP3Q96DZ5 547 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 RTFDC1Q9BY42 306 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-208ENST00000551691 PCIF1Q9H4Z3 704 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 CNTD2Q9H8S5 307 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 EMC7Q9NPA0 242 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 GPRC5CQ9NQ84 441 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 SIRT5Q9NXA8 310 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 CLEC1BQ9P126 229 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 TCFL5Q9UL49 500 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 FZD1Q9UP38 647 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 ANKRD6Q9Y2G4 727 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 IRAK3Q9Y616 596 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 LAMB4A4D0S4 1761 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 RTL1A6NKG5 1358 aa4.65□□□□□ -1.67
LIMA1-208ENST00000551691 ANKRD26Q9UPS8 1709 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 NPHP3-ACAD11A0A0J9YXS1 232 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 TMEM82A0PJX8 343 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 PTPDC1A2A3K4 754 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 CCDC66A2RUB6 948 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 HIP1RO75146 1068 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 HSP90AB1P08238 724 aaKnown RBP4.64□□□□□ -1.67
LIMA1-208ENST00000551691 SYPP08247 313 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 PLS3P13797 630 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 PAMP19021 973 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 AFF3P51826 1226 aaKnown RBP4.64□□□□□ -1.67
LIMA1-208ENST00000551691 NCKAP1LP55160 1127 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 RBM10P98175 930 aaKnown RBP4.64□□□□□ -1.67
LIMA1-208ENST00000551691 KLF1Q13351 362 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-208ENST00000551691 EIF4A2Q14240 407 aaKnown RBP4.64□□□□□ -1.67
LIMA1-208ENST00000551691 SNX17Q15036 470 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 ARHGAP44Q17R89 818 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 ARHGAP29Q52LW3 1261 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 PLEKHO1Q53GL0 409 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-208ENST00000551691 EEF1DP3Q658K8 133 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 DGKHQ86XP1 1220 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 CHTF18Q8WVB6 975 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 FBXW5Q969U6 566 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 VWCEQ96DN2 955 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 FUBP3Q96I24 572 aaKnown RBP eCLIP4.64□□□□□ -1.67
LIMA1-208ENST00000551691 MAP6Q96JE9 813 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 SIGLEC10Q96LC7 697 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 LRGUKQ96M69 825 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 CELF4Q9BZC1 486 aaKnown RBP4.64□□□□□ -1.67
LIMA1-208ENST00000551691 TRIM8Q9BZR9 551 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 EPB41L4AQ9HCS5 686 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-208ENST00000551691 CRTAC1Q9NQ79 661 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 JAG2Q9Y219 1238 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 INVSQ9Y283 1065 aa4.64□□□□□ -1.67
LIMA1-208ENST00000551691 GIT1Q9Y2X7 761 aa4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms