RNA–Protein interactions for RNA: ENST00000545707.5

LDLR-204, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,429 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-204ENST00000545707 SLC16A4O15374 487 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 CTNND1O60716 968 aaKnown RBP17.02■□□□□ 0.32
LDLR-204ENST00000545707 PHF2O75151 1096 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 CHN1P15882 459 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 DHX34Q14147 1143 aaKnown RBP17.02■□□□□ 0.32
LDLR-204ENST00000545707 DENND2CQ68D51 928 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 UBL4BQ8N7F7 174 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 KREMEN1Q96MU8 473 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 TMEM117Q9H0C3 514 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 VCPKMTQ9H867 229 aa17.02■□□□□ 0.32
LDLR-204ENST00000545707 LARSQ9P2J5 1176 aaKnown RBP17.02■□□□□ 0.32
LDLR-204ENST00000545707 FAM187AA6NFU0 413 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 NFIBO00712 420 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 ADRB2P07550 413 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 SPP2Q13103 211 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 CCDC25Q86WR0 208 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 EPS8L3Q8TE67 593 aaKnown RBP17.01■□□□□ 0.31
LDLR-204ENST00000545707 EPS8L1Q8TE68 723 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 SEMA4DQ92854 862 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 TATDN2Q93075 761 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 SAAL1Q96ER3 474 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 XPO6Q96QU8 1125 aaKnown RBP17.01■□□□□ 0.31
LDLR-204ENST00000545707 MTFR1LQ9H019 292 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 KCND2Q9NZV8 630 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 TRPC6Q9Y210 931 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 SRRM3A6NNA2 597 aaPredicted RBP17.01■□□□□ 0.31
LDLR-204ENST00000545707 DRD4P21917 467 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 PEX3P56589 373 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 CCDC38Q502W7 563 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 PHLDB2Q86SQ0 1253 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 CBWD2Q8IUF1 395 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 CCDC105Q8IYK2 499 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 XXYLT1Q8NBI6 393 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 CHURC1Q8WUH1 139 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 CCDC114Q96M63 670 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 KIFC3Q9BVG8 833 aa17.01■□□□□ 0.31
LDLR-204ENST00000545707 RTN2O75298 545 aa17■□□□□ 0.31
LDLR-204ENST00000545707 PAEPP09466 180 aa17■□□□□ 0.31
LDLR-204ENST00000545707 RARRES1P49788 294 aa17■□□□□ 0.31
LDLR-204ENST00000545707 EIF3BP55884 814 aaKnown RBP17■□□□□ 0.31
LDLR-204ENST00000545707 FKBP1AP62942 108 aaKnown RBP17■□□□□ 0.31
LDLR-204ENST00000545707 CETN1Q12798 172 aa17■□□□□ 0.31
LDLR-204ENST00000545707 C11orf63Q6NUN7 778 aa17■□□□□ 0.31
LDLR-204ENST00000545707 HAUS6Q7Z4H7 955 aa17■□□□□ 0.31
LDLR-204ENST00000545707 CACNA2D3Q8IZS8 1091 aa17■□□□□ 0.31
LDLR-204ENST00000545707 ACCSQ96QU6 501 aa17■□□□□ 0.31
LDLR-204ENST00000545707 NUP85Q9BW27 656 aa17■□□□□ 0.31
LDLR-204ENST00000545707 ADAM7Q9H2U9 754 aa17■□□□□ 0.31
LDLR-204ENST00000545707 TOPORSQ9NS56 1045 aaPredicted RBP17■□□□□ 0.31
LDLR-204ENST00000545707 HOMER2Q9NSB8 354 aa17■□□□□ 0.31
LDLR-204ENST00000545707 RASAL2Q9UJF2 1139 aa17■□□□□ 0.31
LDLR-204ENST00000545707 NOCTQ9UK39 431 aaKnown RBP17■□□□□ 0.31
LDLR-204ENST00000545707 DBR1Q9UK59 544 aaKnown RBP17■□□□□ 0.31
LDLR-204ENST00000545707 TRPC5Q9UL62 973 aaPredicted RBP17■□□□□ 0.31
LDLR-204ENST00000545707 SPATA31A6Q5VVP1 1343 aa17■□□□□ 0.31
LDLR-204ENST00000545707 SYNGAP1Q96PV0 1343 aa17■□□□□ 0.31
LDLR-204ENST00000545707 DHX15O43143 795 aaKnown RBP17■□□□□ 0.31
LDLR-204ENST00000545707 SPOPO43791 374 aa17■□□□□ 0.31
LDLR-204ENST00000545707 RARAP10276 462 aa17■□□□□ 0.31
LDLR-204ENST00000545707 CTNNA2P26232 953 aa17■□□□□ 0.31
LDLR-204ENST00000545707 CHRNA3P32297 505 aa17■□□□□ 0.31
LDLR-204ENST00000545707 MXI1P50539 228 aa17■□□□□ 0.31
LDLR-204ENST00000545707 UGCGQ16739 394 aa17■□□□□ 0.31
LDLR-204ENST00000545707 ERMARDQ5T6L9 678 aa17■□□□□ 0.31
LDLR-204ENST00000545707 CPXCR1Q8N123 301 aa17■□□□□ 0.31
LDLR-204ENST00000545707 DHX38Q92620 1227 aaKnown RBP17■□□□□ 0.31
LDLR-204ENST00000545707 QTRT2Q9H974 415 aaKnown RBP17■□□□□ 0.31
LDLR-204ENST00000545707 VEZTQ9HBM0 779 aa17■□□□□ 0.31
LDLR-204ENST00000545707 CD248Q9HCU0 757 aa17■□□□□ 0.31
LDLR-204ENST00000545707 PCDHA3Q9Y5H8 950 aa17■□□□□ 0.31
LDLR-204ENST00000545707 MYH11P35749 1972 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 COL11A2P13942 1736 aaPredicted RBP16.99■□□□□ 0.31
LDLR-204ENST00000545707 MIF4GDA9UHW6 222 aaKnown RBP16.99■□□□□ 0.31
LDLR-204ENST00000545707 P4HBP07237 508 aaKnown RBP16.99■□□□□ 0.31
LDLR-204ENST00000545707 NUDT17P0C025 328 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 SETQ01105 290 aaPredicted RBP16.99■□□□□ 0.31
LDLR-204ENST00000545707 DGKZQ13574 1117 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 SEL1L2Q5TEA6 688 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 HOOK3Q86VS8 718 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 TMEM39BQ9GZU3 492 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 CCDC113Q9H0I3 377 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 EHMT1Q9H9B1 1298 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 SLC40A1Q9NP59 571 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 HERC5Q9UII4 1024 aaKnown RBP16.99■□□□□ 0.31
LDLR-204ENST00000545707 GGA2Q9UJY4 613 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 CCPG1Q9ULG6 757 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 C5orf60A6NFR6 353 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 H0YIN7 160 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 RGS16O15492 202 aaPredicted RBP16.99■□□□□ 0.31
LDLR-204ENST00000545707 PLS3P13797 630 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 FMO1Q01740 532 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 SNX1Q13596 522 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 RASA3Q14644 834 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 PPP2R5EQ16537 467 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 GKAP1Q5VSY0 366 aaPredicted RBP16.99■□□□□ 0.31
LDLR-204ENST00000545707 PLA2G4FQ68DD2 849 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 KRT27Q7Z3Y8 459 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 ZNF564Q8TBZ8 553 aaPredicted RBP16.99■□□□□ 0.31
LDLR-204ENST00000545707 C1orf54Q8WWF1 131 aa16.99■□□□□ 0.31
LDLR-204ENST00000545707 CHMP6Q96FZ7 201 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms