RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 LHX6Q9UPM6 363 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 PCDHB2Q9Y5E7 798 aa9.46□□□□□ -0.9
USP28-215ENST00000545608 WDR81Q562E7 1941 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 DDHD2O94830 711 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 SLITRK3O94933 977 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 LARGE1O95461 756 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 WEE2P0C1S8 567 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 CTSAP10619 480 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 EPCAMP16422 314 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 RFC5P40937 340 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 RAB27AP51159 221 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 CYP4A11Q02928 519 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 RNASELQ05823 741 aaKnown RBP9.45□□□□□ -0.9
USP28-215ENST00000545608 SIGLEC14Q08ET2 396 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 LAMTOR4Q0VGL1 99 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 MCM6Q14566 821 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 ME3Q16798 604 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 XKR9Q5GH70 373 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 OTUD6AQ7L8S5 288 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 DDX53Q86TM3 631 aaKnown RBP9.45□□□□□ -0.9
USP28-215ENST00000545608 FERMT3Q86UX7 667 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 TPH2Q8IWU9 490 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 FEZF2Q8TBJ5 459 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 SLC22A17Q8WUG5 538 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 PSPC1Q8WXF1 523 aaKnown RBP9.45□□□□□ -0.9
USP28-215ENST00000545608 RSPH1Q8WYR4 309 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 TNFRSF25Q93038 417 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 PGBD4Q96DM1 585 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 NAP1L4Q99733 375 aaKnown RBP9.45□□□□□ -0.9
USP28-215ENST00000545608 VN1R3Q9BXE9 311 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 ADAM7Q9H2U9 754 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 POMKQ9H5K3 350 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 ZSWIM4Q9H7M6 989 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 XPNPEP1Q9NQW7 623 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 PPME1Q9Y570 386 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 IRAK3Q9Y616 596 aa9.45□□□□□ -0.9
USP28-215ENST00000545608 A0A087WWV3 80 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP9.44□□□□□ -0.9
USP28-215ENST00000545608 RCCD1A6NED2 376 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 C2CD4DB7Z1M9 353 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 WNT7AO00755 349 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 ASAP2O43150 1006 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 BAG4O95429 457 aaKnown RBP9.44□□□□□ -0.9
USP28-215ENST00000545608 POMCP01189 267 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 KRT2P35908 639 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 MRE11P49959 708 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 ANAPC15P60006 121 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 ITIH3Q06033 890 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 BMS1Q14692 1282 aaKnown RBP9.44□□□□□ -0.9
USP28-215ENST00000545608 EMC2Q15006 297 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 PTPN21Q16825 1174 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 RARS2Q5T160 578 aaKnown RBP9.44□□□□□ -0.9
USP28-215ENST00000545608 CES5AQ6NT32 575 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 EXOC8Q8IYI6 725 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 SLFN12Q8IYM2 578 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 RNF149Q8NC42 400 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 NSUN7Q8NE18 718 aaKnown RBP9.44□□□□□ -0.9
USP28-215ENST00000545608 PRSS33Q8NF86 280 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 TCP11Q8WWU5 503 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 WASF1Q92558 559 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 ASIC4Q96FT7 647 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 MTRQ99707 1265 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 HSD17B14Q9BPX1 270 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 EIF2AK1Q9BQI3 630 aaKnown RBP9.44□□□□□ -0.9
USP28-215ENST00000545608 RSAD1Q9HA92 442 aa9.44□□□□□ -0.9
USP28-215ENST00000545608 ZNF318Q5VUA4 2279 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 BTBD18B2RXH4 712 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 PPP1R3GB7ZBB8 358 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 NRP1O14786 923 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 GAS2O43903 313 aaKnown RBP9.43□□□□□ -0.9
USP28-215ENST00000545608 JAK2O60674 1132 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 LILRB3O75022 631 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 ALDH2P05091 517 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 NCLP19338 710 aaKnown RBP9.43□□□□□ -0.9
USP28-215ENST00000545608 PTENP60484 403 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 GIT2Q14161 759 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 ANKRD1Q15327 319 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 PTPN14Q15678 1187 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 FBXL6Q8N531 539 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 TMEM87AQ8NBN3 555 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 KREMEN2Q8NCW0 462 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 SMG8Q8ND04 991 aaKnown RBP9.43□□□□□ -0.9
USP28-215ENST00000545608 URGCPQ8TCY9 931 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 ASAP3Q8TDY4 903 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 CPB2Q96IY4 423 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 NECTIN4Q96NY8 510 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 KLHL5Q96PQ7 755 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 ARID3AQ99856 593 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 TMEM175Q9BSA9 504 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 EIF2AQ9BY44 585 aaKnown RBP9.43□□□□□ -0.9
USP28-215ENST00000545608 MIOSQ9NXC5 875 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 PCDHA12Q9UN75 941 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 FAN1Q9Y2M0 1017 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 IPPQ9Y573 584 aa9.43□□□□□ -0.9
USP28-215ENST00000545608 CNTNAP2Q9UHC6 1331 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 CARNS1A5YM72 827 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 SNPHO15079 494 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 TSPAN1O60635 241 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 ERLIN2O94905 339 aa9.42□□□□□ -0.9
USP28-215ENST00000545608 LYPLA2O95372 231 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms