RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 TMEM119Q4V9L6 283 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 RINT1Q6NUQ1 792 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 AGMOQ6ZNB7 445 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 SLC39A11Q8N1S5 342 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 SYT2Q8N9I0 419 aaPredicted RBP13.03□□□□□ -0.32
HDAC4-216ENST00000544989 RASSF8Q8NHQ8 419 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 CPB2Q96IY4 423 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 UHRF1Q96T88 793 aaPredicted RBP13.03□□□□□ -0.32
HDAC4-216ENST00000544989 ENTPD7Q9NQZ7 604 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 CLDND1Q9NY35 253 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 INPP5FQ9Y2H2 1132 aa13.03□□□□□ -0.32
HDAC4-216ENST00000544989 KIAA1671Q9BY89 1806 aa13.02□□□□□ -0.32
HDAC4-216ENST00000544989 K7ERI5 159 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 FSCN2O14926 492 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 HIP1RO75146 1068 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 ALDH2P05091 517 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 DNAJB1P25685 340 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 ABCD1P33897 745 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 TXLNAP40222 546 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 HYAL1Q12794 435 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 RESTQ13127 1097 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 SMC1AQ14683 1233 aaKnown RBP13.02□□□□□ -0.33
HDAC4-216ENST00000544989 CTC1Q2NKJ3 1217 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 DCAF4L1Q3SXM0 396 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 C1orf186Q6ZWK4 172 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 EFHBQ8N7U6 833 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 SMG8Q8ND04 991 aaKnown RBP13.02□□□□□ -0.33
HDAC4-216ENST00000544989 CCDC113Q9H0I3 377 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 TMEM134Q9H6X4 195 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 TLE6Q9H808 572 aa13.02□□□□□ -0.33
HDAC4-216ENST00000544989 ARL5CA6NH57 179 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 CCDC169A6NNP5 214 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 NPTXRO95502 500 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 SSBP05455 408 aaKnown RBP eCLIP13.01□□□□□ -0.33
HDAC4-216ENST00000544989 GALTP07902 379 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 PLA2G4BP0C869 781 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 NPTX2P47972 431 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 ADAM15Q13444 863 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 LONRF3Q496Y0 759 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 EP400NLQ6ZTU2 488 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 TMC7Q7Z402 723 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 DDX53Q86TM3 631 aaKnown RBP13.01□□□□□ -0.33
HDAC4-216ENST00000544989 SPIRE2Q8WWL2 714 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 BSNDQ8WZ55 320 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 IGSF21Q96ID5 467 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 TCF25Q9BQ70 676 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 NTPCRQ9BSD7 190 aaKnown RBP13.01□□□□□ -0.33
HDAC4-216ENST00000544989 RUSC1Q9BVN2 902 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 EIF2AQ9BY44 585 aaKnown RBP13.01□□□□□ -0.33
HDAC4-216ENST00000544989 CCSER1Q9C0I3 900 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 NRDE2Q9H7Z3 1164 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 KMT5AQ9NQR1 393 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 LARSQ9P2J5 1176 aaKnown RBP13.01□□□□□ -0.33
HDAC4-216ENST00000544989 HCSTQ9UBK5 93 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 CCDC39Q9UFE4 941 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 ODF2LQ9ULJ1 636 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 MTMR6Q9Y217 621 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 TRIOO75962 3097 aa13.01□□□□□ -0.33
HDAC4-216ENST00000544989 MEIS3P2A8K0S8 358 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 B4GALT5O43286 388 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 PLS3P13797 630 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 NRIP1P48552 1158 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 NDUFV1P49821 464 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 KCNQ1P51787 676 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 SLC12A3P55017 1021 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 PEX3P56589 373 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 GRIK3Q13003 919 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 ATF7IP2Q5U623 682 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 PTCRAQ6ISU1 281 aaPredicted RBP13□□□□□ -0.33
HDAC4-216ENST00000544989 TMEM87AQ8NBN3 555 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 ZNF396Q96N95 335 aaPredicted RBP13□□□□□ -0.33
HDAC4-216ENST00000544989 PNMA5Q96PV4 448 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 RPS6KC1Q96S38 1066 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 MRPL4Q9BYD3 311 aaKnown RBP13□□□□□ -0.33
HDAC4-216ENST00000544989 GBP3Q9H0R5 595 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 NXF3Q9H4D5 531 aaKnown RBP13□□□□□ -0.33
HDAC4-216ENST00000544989 PDZD7Q9H5P4 517 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 IGFLR1Q9H665 355 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 ARHGAP28Q9P2N2 729 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 PARP2Q9UGN5 583 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 SSX2IPQ9Y2D8 614 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 FAN1Q9Y2M0 1017 aa13□□□□□ -0.33
HDAC4-216ENST00000544989 SRPRBQ9Y5M8 271 aaKnown RBP13□□□□□ -0.33
HDAC4-216ENST00000544989 GRXCR2A6NFK2 248 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 POMCP01189 267 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 LIG1P18858 919 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 IRS1P35568 1242 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 PBX3P40426 434 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 MLH1P40692 756 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 ERVFC1P60507 584 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 STRN3Q13033 797 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 SLC39A14Q15043 492 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 PTPAQ15257 358 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 DUSP6Q16828 381 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 PLPP4Q5VZY2 271 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 KCNK18Q7Z418 384 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 VPS52Q8N1B4 723 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 MRPL43Q8N983 215 aaKnown RBP12.99□□□□□ -0.33
HDAC4-216ENST00000544989 GAD1Q99259 594 aa12.99□□□□□ -0.33
HDAC4-216ENST00000544989 APOL6Q9BWW8 343 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms