RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 IFT74Q96LB3 600 aa12.61□□□□□ -0.39
YBX3-216ENST00000544622 DRC1Q96MC2 740 aa12.61□□□□□ -0.39
YBX3-216ENST00000544622 ZNF558Q96NG5 402 aa12.61□□□□□ -0.39
YBX3-216ENST00000544622 CLIC6Q96NY7 704 aa12.61□□□□□ -0.39
YBX3-216ENST00000544622 KIFC3Q9BVG8 833 aa12.61□□□□□ -0.39
YBX3-216ENST00000544622 PDZD7Q9H5P4 517 aa12.61□□□□□ -0.39
YBX3-216ENST00000544622 TMEM134Q9H6X4 195 aa12.61□□□□□ -0.39
YBX3-216ENST00000544622 PTPRHQ9HD43 1115 aa12.61□□□□□ -0.39
YBX3-216ENST00000544622 MIOSQ9NXC5 875 aa12.61□□□□□ -0.39
YBX3-216ENST00000544622 KANSL3Q9P2N6 904 aa12.61□□□□□ -0.39
YBX3-216ENST00000544622 GIT1Q9Y2X7 761 aa12.61□□□□□ -0.39
YBX3-216ENST00000544622 PLXNA4Q9HCM2 1894 aa12.61□□□□□ -0.39
YBX3-216ENST00000544622 C5orf42Q9H799 3197 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 ARL5CA6NH57 179 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 NCK2O43639 380 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 EFEMP2O95967 443 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 PRKCBP05771 671 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 ITGA4P13612 1032 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 DDIT3P35638 169 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 PPM1AP35813 382 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 ALDH7A1P49419 539 aaKnown RBP12.6□□□□□ -0.39
YBX3-216ENST00000544622 PEX3P56589 373 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 DSC1Q08554 894 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 PRPF4BQ13523 1007 aaKnown RBP12.6□□□□□ -0.39
YBX3-216ENST00000544622 PKP1Q13835 747 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 KCNC3Q14003 757 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 NT5DC1Q5TFE4 455 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 ADGRD2Q7Z7M1 963 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 TMEM173Q86WV6 379 aaPredicted RBP12.6□□□□□ -0.39
YBX3-216ENST00000544622 THNSL1Q8IYQ7 743 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 DEPTORQ8TB45 409 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 CALML4Q96GE6 196 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 NXF3Q9H4D5 531 aaKnown RBP12.6□□□□□ -0.39
YBX3-216ENST00000544622 UBE2ZQ9H832 354 aaPredicted RBP12.6□□□□□ -0.39
YBX3-216ENST00000544622 TLR9Q9NR96 1032 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 SPG21Q9NZD8 308 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 DNAJB4Q9UDY4 337 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 KCNG1Q9UIX4 513 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 USP20Q9Y2K6 914 aa12.6□□□□□ -0.39
YBX3-216ENST00000544622 RBM19Q9Y4C8 960 aaKnown RBP12.6□□□□□ -0.39
YBX3-216ENST00000544622 BDP1A6H8Y1 2624 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 ZMYM2Q9UBW7 1377 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 CARNS1A5YM72 827 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 SFI1A8K8P3 1242 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 NT5C1B-RDH14C9J2C7 533 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 K7ERI5 159 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 ABLIM1O14639 778 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 ZSCAN22P10073 491 aaPredicted RBP12.59□□□□□ -0.39
YBX3-216ENST00000544622 PLS3P13797 630 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 PLCG1P19174 1290 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 GTF2F1P35269 517 aaKnown RBP eCLIP12.59□□□□□ -0.39
YBX3-216ENST00000544622 KCNQ1P51787 676 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 ZNF131P52739 623 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 CEBPZQ03701 1054 aaKnown RBP12.59□□□□□ -0.39
YBX3-216ENST00000544622 ADAM15Q13444 863 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 GIT2Q14161 759 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 AAK1Q2M2I8 961 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 LEXMQ3ZCV2 418 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 SPECC1Q5M775 1068 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 PDE12Q6L8Q7 609 aaKnown RBP12.59□□□□□ -0.39
YBX3-216ENST00000544622 TMEM161BQ8NDZ6 487 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.59□□□□□ -0.39
YBX3-216ENST00000544622 RAD54LQ92698 747 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 SYMPKQ92797 1274 aaKnown RBP12.59□□□□□ -0.39
YBX3-216ENST00000544622 IGSF21Q96ID5 467 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 CDK5RAP3Q96JB5 506 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 ZFP42Q96MM3 310 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 GAD1Q99259 594 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 PUF60Q9UHX1 559 aaKnown RBP12.59□□□□□ -0.39
YBX3-216ENST00000544622 INPP5FQ9Y2H2 1132 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 PCDHGC5Q9Y5F6 944 aa12.59□□□□□ -0.39
YBX3-216ENST00000544622 NPHP3-ACAD11A0A0J9YXS1 232 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 CCDC169A6NNP5 214 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 DLL1O00548 723 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 N4BP3O15049 544 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 ZC3H11AO75152 810 aaKnown RBP eCLIP12.58□□□□□ -0.4
YBX3-216ENST00000544622 PPP6R2O75170 966 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 NPTXRO95502 500 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 F13A1P00488 732 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 POMCP01189 267 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 PROZP22891 400 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 AKAP5P24588 427 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 MLH1P40692 756 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 SLC11A1P49279 550 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 KRT17Q04695 432 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 DLX2Q07687 328 aaPredicted RBP12.58□□□□□ -0.4
YBX3-216ENST00000544622 RAD51AP2Q09MP3 1159 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 DMP1Q13316 513 aaPredicted RBP12.58□□□□□ -0.4
YBX3-216ENST00000544622 MCM6Q14566 821 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 ATF7IP2Q5U623 682 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 EEF1DP3Q658K8 133 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 COLGALT2Q8IYK4 626 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 KRI1Q8N9T8 703 aaKnown RBP12.58□□□□□ -0.4
YBX3-216ENST00000544622 BCL7CQ8WUZ0 217 aaPredicted RBP12.58□□□□□ -0.4
YBX3-216ENST00000544622 FIZ1Q96SL8 496 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 ACO2Q99798 780 aaKnown RBP12.58□□□□□ -0.4
YBX3-216ENST00000544622 TMEM175Q9BSA9 504 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 VN1R3Q9BXE9 311 aa12.58□□□□□ -0.4
YBX3-216ENST00000544622 TRIM6Q9C030 488 aaPredicted RBP12.58□□□□□ -0.4
YBX3-216ENST00000544622 NGRNQ9NPE2 291 aaKnown RBP12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms