RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	PPP1R2	P41236	205 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	MAGEA10	P43363	369 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	ZNF568	Q3ZCX4	644 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	EEF1DP3	Q658K8	133 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	SLFN12L	Q6IEE8	588 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	PSRC1	Q6PGN9	363 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	RBM43	Q6ZSC3	357 aa	Known RBP	11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	ZNF365	Q70YC5	407 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	OTOP2	Q7RTS6	562 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	GUF1	Q8N442	669 aa	Known RBP	11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	MLKL	Q8NB16	471 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	GOLGA5	Q8TBA6	731 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	POMGNT1	Q8WZA1	660 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	CCDC51	Q96ER9	411 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	ZBTB45	Q96K62	511 aa	Predicted RBP	11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	TSG101	Q99816	390 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	IKZF4	Q9H2S9	585 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	PDZD7	Q9H5P4	517 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	ANO10	Q9NW15	660 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	DACH1	Q9UI36	760 aa		11.12	□□□□□ -0.63
CPSF7-221	ENST00000543545	KAT6A	Q92794	2004 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	TISP43	B9A030	160 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	ANKRD63	C9JTQ0	380 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	CLIC2	O15247	247 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	MGEA5	O60502	916 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	EFCAB14	O75071	495 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	PIGR	P01833	764 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	EDN1	P05305	212 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	CCDC192	P0DO97	292 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	SKI	P12755	728 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	BMP6	P22004	513 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	HOXD13	P35453	343 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	KCNJ6	P48051	423 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	EPHB4	P54760	987 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	STX1A	Q16623	288 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	BMT2	Q1RMZ1	405 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	TCTN1	Q2MV58	587 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	ZSCAN23	Q3MJ62	389 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	DCAF4L1	Q3SXM0	396 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	ARMCX5	Q6P1M9	558 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	SLC27A1	Q6PCB7	646 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	MPZL3	Q6UWV2	235 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	FAM43B	Q6ZT52	329 aa	Predicted RBP	11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	SLC24A5	Q71RS6	500 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	C16orf59	Q7L2K0	433 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	THNSL1	Q8IYQ7	743 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	HACE1	Q8IYU2	909 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	ADSSL1	Q8N142	457 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	NELFB	Q8WX92	580 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	KCNN1	Q92952	543 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	DHTKD1	Q96HY7	919 aa	Predicted RBP	11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	MSTO1	Q9BUK6	570 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	APOL6	Q9BWW8	343 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	EIF2A	Q9BY44	585 aa	Known RBP	11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	UBE2O	Q9C0C9	1292 aa	Known RBP	11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	MTIF3	Q9H2K0	278 aa	Known RBP	11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	PCIF1	Q9H4Z3	704 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	RGS18	Q9NS28	235 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	C1orf112	Q9NSG2	853 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	LRFN2	Q9ULH4	789 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	CTNND2	Q9UQB3	1225 aa		11.11	□□□□□ -0.63
CPSF7-221	ENST00000543545	BICDL2	A1A5D9	508 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	PPP1R3G	B7ZBB8	358 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	PDXK	O00764	312 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	UPP2	O95045	317 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	AMH	P03971	560 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	MCF2	P10911	925 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	CD44	P16070	742 aa	Known RBP	11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	RPL13	P26373	211 aa	Known RBP	11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	RAB27A	P51159	221 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	CYP2J2	P51589	502 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	STX17	P56962	302 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	OSTN	P61366	133 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	SNRPF	P62306	86 aa	Known RBP	11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	TYRO3	Q06418	890 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	PAK1	Q13153	545 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	DSC3	Q14574	896 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	NOLC1	Q14978	699 aa	Known RBP eCLIP	11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	TPD52L1	Q16890	204 aa	Predicted RBP	11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	DPCR1	Q3MIW9	517 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	TMEM240	Q5SV17	173 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	RTN4RL1	Q86UN2	441 aa	Predicted RBP	11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	P2RX5	Q93086	422 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	11.1	□□□□□ -0.63	5e-10	■■■■□ 23.5
CPSF7-221	ENST00000543545	TSPYL2	Q9H2G4	693 aa	Predicted RBP	11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	SEMA6B	Q9H3T3	888 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	AGPAT3	Q9NRZ7	376 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	FAM105A	Q9NUU6	356 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	TYW1	Q9NV66	732 aa	Known RBP	11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	CGN	Q9P2M7	1197 aa	Known RBP	11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	PARP2	Q9UGN5	583 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	AGO2	Q9UKV8	859 aa	Known RBP	11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	PCDHB7	Q9Y5E2	793 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	PCDHB2	Q9Y5E7	798 aa		11.1	□□□□□ -0.63
CPSF7-221	ENST00000543545	DNAH12	Q6ZR08	3092 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	TRIP12	Q14669	1992 aa	Predicted RBP	11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545		A0A0U1RQF3	1178 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	GOLGA8IP	A6NC78	632 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	GOLGA8J	A6NMD2	632 aa		11.09	□□□□□ -0.63
CPSF7-221	ENST00000543545	TGFB1I1	O43294	461 aa		11.09	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms