RNA–Protein interactions for RNA: ENST00000542838.5

DDX11-223, Transcript of DEAD/H-box helicase 11, human

APPRIS P1 TSL 1 (best) BASIC

Gene DDX11, Length 3,079 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-223	ENST00000542838	WNT8A	Q9H1J5	351 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	ATP6V0A4	Q9HBG4	840 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	DONSON	Q9NYP3	566 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	SUFU	Q9UMX1	484 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	ATMIN	O43313	823 aa	Predicted RBP	13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	RTN2	O75298	545 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	DLG4	P78352	724 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	LRRC14	Q15048	493 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	DOK7	Q18PE1	504 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	TNFAIP8L3	Q5GJ75	292 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	EXOC3L1	Q86VI1	746 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	RUNDC3B	Q96NL0	473 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	GGT7	Q9UJ14	662 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	PASK	Q96RG2	1323 aa		13.9	□□□□□ -0.18
DDX11-223	ENST00000542838	CFAP73	A6NFT4	308 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	SNX3	O60493	162 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	NDUFB10	O96000	172 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	PDE6C	P51160	858 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	ZNF131	P52739	623 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	HHIPL2	Q6UWX4	724 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	SLC13A5	Q86YT5	568 aa	Predicted RBP	13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	PCIF1	Q9H4Z3	704 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	HOMER3	Q9NSC5	361 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	DDTL	A6NHG4	134 aa	Predicted RBP	13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	SPOP	O43791	374 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	PSMD10	O75832	226 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	GDF11	O95390	407 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	RPSA	P08865	295 aa	Known RBP	13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	CETN1	Q12798	172 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	CALCOCO2	Q13137	446 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	TCEAL1	Q15170	157 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	LONRF1	Q17RB8	773 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	CYFIP1	Q7L576	1253 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	OTUD6A	Q7L8S5	288 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	BTBD6	Q96KE9	485 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	ROPN1B	Q9BZX4	212 aa	Predicted RBP	13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	ROPN1	Q9HAT0	212 aa	Predicted RBP	13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	AGAP1	Q9UPQ3	857 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	QSER1	Q2KHR3	1735 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	SMCHD1	A6NHR9	2005 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	UBOX5	O94941	541 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	RARA	P10276	462 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	PRELP	P51888	382 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	CYP1B1	Q16678	543 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	MFSD5	Q6N075	450 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	CPNE8	Q86YQ8	564 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	NACC1	Q96RE7	527 aa		13.89	□□□□□ -0.19
DDX11-223	ENST00000542838	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	PPEF1	O14829	653 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	SGPL1	O95470	568 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	ECEL1	O95672	775 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	HOXA10	P31260	410 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	GBP2	P32456	591 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	RNF207	Q6ZRF8	634 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	SLC9A9	Q8IVB4	645 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	MORC4	Q8TE76	937 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	CRAMP1	Q96RY5	1269 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	PCDHB18P	Q96TA0	734 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	POP1	Q99575	1024 aa	Known RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	DDX23	Q9BUQ8	820 aa	Known RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	CDC42EP4	Q9H3Q1	356 aa	Known RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	13.88	□□□□□ -0.19	2e-6	■■■■■ 146.2
DDX11-223	ENST00000542838	WRAP73	Q9P2S5	460 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	TCP11X1	B4DZS4	312 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	TULP1	O00294	542 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	GAS7	O60861	476 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	ACSL3	O95573	720 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	CFB	P00751	764 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	BMP3	P12645	472 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	GCLM	P48507	274 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	CLNS1A	P54105	237 aa	Known RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	UBXN2A	P68543	259 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	PPP2R5C	Q13362	524 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	MKRN4P	Q13434	485 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	LLGL1	Q15334	1064 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	ACCSL	Q4AC99	568 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	ARHGEF2	Q92974	986 aa	Known RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	KAT5	Q92993	513 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	CD101	Q93033	1021 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	FGFR1OP2	Q9NVK5	253 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	PI4KB	Q9UBF8	816 aa		13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	USP15	Q9Y4E8	981 aa	Predicted RBP	13.88	□□□□□ -0.19
DDX11-223	ENST00000542838	KIF1C	O43896	1103 aa	Known RBP	13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	SCP2	P22307	547 aa		13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	CRK	P46108	304 aa		13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	VAMP7	P51809	220 aa		13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	PPP3CA	Q08209	521 aa		13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	SIX1	Q15475	284 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	TLDC1	Q6P9B6	456 aa		13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	TRMT10C	Q7L0Y3	403 aa	Known RBP	13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	MAEA	Q7L5Y9	396 aa		13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	SP8	Q8IXZ3	490 aa		13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	ZNF564	Q8TBZ8	553 aa	Predicted RBP	13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	VTI1A	Q96AJ9	217 aa		13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	NUP85	Q9BW27	656 aa		13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	ECT2	Q9H8V3	914 aa		13.87	□□□□□ -0.19
DDX11-223	ENST00000542838	SIPA1L1	O43166	1804 aa		13.87	□□□□□ -0.19
DDX11-223	ENST00000542838		G3V3G9	751 aa		13.87	□□□□□ -0.19
DDX11-223	ENST00000542838		K7ENM7	598 aa		13.87	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms