RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 MATR3P43243 847 aaKnown RBP eCLIP15.75■□□□□ 0.11
CLIP1-216ENST00000541410 CBX1P83916 185 aa15.75■□□□□ 0.11
CLIP1-216ENST00000541410 ZBTB41Q5SVQ8 909 aa15.75■□□□□ 0.11
CLIP1-216ENST00000541410 DHX37Q8IY37 1157 aaKnown RBP15.75■□□□□ 0.11
CLIP1-216ENST00000541410 PPM1KQ8N3J5 372 aa15.75■□□□□ 0.11
CLIP1-216ENST00000541410 GPR161Q8N6U8 529 aaKnown RBP15.75■□□□□ 0.11
CLIP1-216ENST00000541410 SLC20A1Q8WUM9 679 aa15.75■□□□□ 0.11
CLIP1-216ENST00000541410 GPR20Q99678 358 aa15.75■□□□□ 0.11
CLIP1-216ENST00000541410 TARS2Q9BW92 718 aaKnown RBP15.75■□□□□ 0.11
CLIP1-216ENST00000541410 HAPLN2Q9GZV7 340 aa15.75■□□□□ 0.11
CLIP1-216ENST00000541410 BZW2Q9Y6E2 419 aaKnown RBP15.75■□□□□ 0.11
CLIP1-216ENST00000541410 TGFB3P10600 412 aa15.75■□□□□ 0.11
CLIP1-216ENST00000541410 NOP2P46087 812 aaKnown RBP15.75■□□□□ 0.11
CLIP1-216ENST00000541410 MRPS25P82663 173 aaKnown RBP15.75■□□□□ 0.11
CLIP1-216ENST00000541410 CELF3Q5SZQ8 465 aaKnown RBP15.75■□□□□ 0.11
CLIP1-216ENST00000541410 TAS1R2Q8TE23 839 aa15.75■□□□□ 0.11
CLIP1-216ENST00000541410 MS4A4AQ96JQ5 239 aa15.75■□□□□ 0.11
CLIP1-216ENST00000541410 CCDC94Q9BW85 323 aaPredicted RBP15.75■□□□□ 0.11
CLIP1-216ENST00000541410 NIFKQ9BYG3 293 aaKnown RBP15.75■□□□□ 0.11
CLIP1-216ENST00000541410 TAS2R14Q9NYV8 317 aa15.75■□□□□ 0.11
CLIP1-216ENST00000541410 SNX12Q9UMY4 172 aa15.75■□□□□ 0.11
CLIP1-216ENST00000541410 ANO9A1A5B4 782 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 K7ERI5 159 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 SRGAP2CP0DJJ0 459 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 ABCB4P21439 1286 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 NLRP11P59045 1033 aaKnown RBP15.74■□□□□ 0.11
CLIP1-216ENST00000541410 C2orf54Q08AI8 447 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 CETN1Q12798 172 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 STRN3Q13033 797 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 FAM160B1Q5W0V3 765 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 GPD1LQ8N335 351 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 OLIG1Q8TAK6 271 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 BRI3BPQ8WY22 251 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 TLR10Q9BXR5 811 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 MAF1Q9H063 256 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 MROH8Q9H579 483 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 RRAGCQ9HB90 399 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 LUC7LQ9NQ29 371 aaKnown RBP15.74■□□□□ 0.11
CLIP1-216ENST00000541410 NRBP2Q9NSY0 501 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 PLXNA1Q9UIW2 1896 aa15.74■□□□□ 0.11
CLIP1-216ENST00000541410 CALCAP01258 141 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 ARL2P36404 184 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 RNASE9P60153 205 aaKnown RBP15.73■□□□□ 0.11
CLIP1-216ENST00000541410 CYP24A1Q07973 514 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 TUBB2AQ13885 445 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 CAPSQ13938 189 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 TARBP2Q15633 366 aaKnown RBP15.73■□□□□ 0.11
CLIP1-216ENST00000541410 BRDTQ58F21 947 aaPredicted RBP15.73■□□□□ 0.11
CLIP1-216ENST00000541410 ARMCX2Q7L311 632 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 GPRC5AQ8NFJ5 357 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 PRPF31Q8WWY3 499 aaKnown RBP15.73■□□□□ 0.11
CLIP1-216ENST00000541410 HVCN1Q96D96 273 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 MS4A14Q96JA4 679 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 OSBPL9Q96SU4 736 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 TUBB2BQ9BVA1 445 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 ADORA2AP29274 412 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 RTP1P59025 263 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 CREG2Q8IUH2 290 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 DOCK3Q8IZD9 2030 aa15.73■□□□□ 0.11
CLIP1-216ENST00000541410 GRID2IPA4D2P6 1211 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 CELF2O95319 508 aaKnown RBP15.72■□□□□ 0.11
CLIP1-216ENST00000541410 SNRPFP62306 86 aaKnown RBP15.72■□□□□ 0.11
CLIP1-216ENST00000541410 TAF3Q5VWG9 929 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 KRT39Q6A163 491 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 CCDC62Q6P9F0 684 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 SV2AQ7L0J3 742 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 VPS36Q86VN1 386 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 DHX38Q92620 1227 aaKnown RBP15.72■□□□□ 0.11
CLIP1-216ENST00000541410 TATDN2Q93075 761 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 KREMEN1Q96MU8 473 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 PPP1R16BQ96T49 567 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 MPHOSPH6Q99547 160 aaKnown RBP15.72■□□□□ 0.11
CLIP1-216ENST00000541410 PDE11AQ9HCR9 933 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 N4BP1O75113 896 aaKnown RBP15.72■□□□□ 0.11
CLIP1-216ENST00000541410 ZMYND10O75800 440 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 NAMPTP43490 491 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 GALCP54803 685 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 IGBP1P78318 339 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 MKRN4PQ13434 485 aaPredicted RBP15.72■□□□□ 0.11
CLIP1-216ENST00000541410 SCARA3Q6AZY7 606 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 RNF10Q8N5U6 811 aaKnown RBP15.72■□□□□ 0.11
CLIP1-216ENST00000541410 TMEM174Q8WUU8 243 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 ZNF516Q92618 1163 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 MFSD14AQ96MC6 490 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 FBXL18Q96ME1 805 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 GBA2Q9HCG7 927 aaPredicted RBP15.72■□□□□ 0.11
CLIP1-216ENST00000541410 CHORDC1Q9UHD1 332 aaPredicted RBP15.72■□□□□ 0.11
CLIP1-216ENST00000541410 PNMA3Q9UL41 463 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 TRPC6Q9Y210 931 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 PLXNB2O15031 1838 aa15.72■□□□□ 0.11
CLIP1-216ENST00000541410 ZBTB42B2RXF5 422 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 TNFAIP3P21580 790 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 BMS1Q14692 1282 aaKnown RBP15.71■□□□□ 0.11
CLIP1-216ENST00000541410 TMCO3Q6UWJ1 677 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 ILDR2Q71H61 639 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 ZBTB33Q86T24 672 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 AFAP1L1Q8TED9 768 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 OSGEPQ9NPF4 335 aa15.71■□□□□ 0.11
CLIP1-216ENST00000541410 ARGLU1Q9NWB6 273 aaPredicted RBP15.71■□□□□ 0.11
CLIP1-216ENST00000541410 AGO2Q9UKV8 859 aaKnown RBP15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms