RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 DLK2Q6UY11 383 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 ZNF526Q8TF50 670 aaPredicted RBP14.92□□□□□ -0.02
RTN3-210ENST00000540798 CNKSR2Q8WXI2 1034 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 RFFLQ8WZ73 363 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 TMEM8AQ9HCN3 771 aa14.92□□□□□ -0.02
RTN3-210ENST00000540798 GOLGA8IPA6NC78 632 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 GOLGA8JA6NMD2 632 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 H0YCG3 227 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 TRMT1LQ7Z2T5 733 aaKnown RBP14.91□□□□□ -0.02
RTN3-210ENST00000540798 FAM71AQ8IYT1 594 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 USP38Q8NB14 1042 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 ACTRT1Q8TDG2 376 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 NIFKQ9BYG3 293 aaKnown RBP14.91□□□□□ -0.02
RTN3-210ENST00000540798 PDE11AQ9HCR9 933 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 STIM2Q9P246 746 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 STYXL1Q9Y6J8 313 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 ERICH4A6NGS2 130 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 CYP24A1Q07973 514 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 TAF3Q5VWG9 929 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 KRT39Q6A163 491 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 NT5DC3Q86UY8 548 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 PALB2Q86YC2 1186 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 SYCE1Q8N0S2 351 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 SEMA4DQ92854 862 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 SAAL1Q96ER3 474 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 HES6Q96HZ4 224 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 POLR3FQ9H1D9 316 aaPredicted RBP14.91□□□□□ -0.02
RTN3-210ENST00000540798 ISCUQ9H1K1 167 aa14.91□□□□□ -0.02
RTN3-210ENST00000540798 DHX33Q9H6R0 707 aaKnown RBP14.91□□□□□ -0.02
RTN3-210ENST00000540798 SOWAHBA6NEL2 793 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 ADM5C9JUS6 153 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 ZMYND10O75800 440 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 CNMDO75829 334 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 OATP04181 439 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 NOP2P46087 812 aaKnown RBP14.9□□□□□ -0.02
RTN3-210ENST00000540798 CLDN10P78369 228 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 CYFIP1Q7L576 1253 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 ANKRD35Q8N283 1001 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 RASGEF1CQ8N431 466 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 KREMEN1Q96MU8 473 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 ZNF302Q9NR11 478 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 NOCTQ9UK39 431 aaKnown RBP14.9□□□□□ -0.02
RTN3-210ENST00000540798 ANKRD62A6NC57 917 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 PIGRP01833 764 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 TNFAIP3P21580 790 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 EMC2Q15006 297 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 SHC3Q92529 594 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 SPATC1LQ9H0A9 340 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 TAS2R14Q9NYV8 317 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 HPCAL4Q9UM19 191 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 CSADQ9Y600 493 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 C15orf39Q6ZRI6 1047 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 GPD1LQ8N335 351 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 SLC35G2Q8TBE7 412 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 HELQQ8TDG4 1101 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 SCFD2Q8WU76 684 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 SLC20A1Q8WUM9 679 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 DCPSQ96C86 337 aaKnown RBP14.9□□□□□ -0.02
RTN3-210ENST00000540798 CALR3Q96L12 384 aaKnown RBP14.9□□□□□ -0.02
RTN3-210ENST00000540798 IFT74Q96LB3 600 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 PORCNQ9H237 461 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 GOLPH3Q9H4A6 298 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 GDF3Q9NR23 364 aa14.9□□□□□ -0.02
RTN3-210ENST00000540798 PEX10O60683 326 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 UBA1P22314 1058 aaKnown RBP14.89□□□□□ -0.03
RTN3-210ENST00000540798 ARL2P36404 184 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 C8orf74Q6P047 294 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 TAF4BQ92750 862 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 KAT5Q92993 513 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 PCYT2Q99447 389 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 SELENOOQ9BVL4 669 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 GSTTP1A0A1W2PQM5 241 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 BHMG1C9JSJ3 638 aaPredicted RBP14.89□□□□□ -0.03
RTN3-210ENST00000540798 FARP2O94887 1054 aaPredicted RBP14.89□□□□□ -0.03
RTN3-210ENST00000540798 CHRNB2P17787 502 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 SP4Q02446 784 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 MAP2K1Q02750 393 aaPredicted RBP14.89□□□□□ -0.03
RTN3-210ENST00000540798 GPS2Q13227 327 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 TARBP2Q15633 366 aaKnown RBP14.89□□□□□ -0.03
RTN3-210ENST00000540798 AFAP1L1Q8TED9 768 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 ARHGEF26Q96DR7 871 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 OSGEPQ9NPF4 335 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 KCNH4Q9UQ05 1017 aa14.89□□□□□ -0.03
RTN3-210ENST00000540798 CXCL11O14625 94 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 KCNK3O14649 394 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 MATR3P43243 847 aaKnown RBP eCLIP14.88□□□□□ -0.031e-6■■□□□ 13.3
RTN3-210ENST00000540798 MTERF2Q49AM1 385 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 SULF1Q8IWU6 871 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 CNPY4Q8N129 248 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 METTL13Q8N6R0 699 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 EPS8L1Q8TE68 723 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 CTNNBL1Q8WYA6 563 aaPredicted RBP14.88□□□□□ -0.03
RTN3-210ENST00000540798 POMGNT1Q8WZA1 660 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 ZCCHC17Q9NP64 241 aaKnown RBP14.88□□□□□ -0.03
RTN3-210ENST00000540798 TTC7AQ9ULT0 858 aaPredicted RBP14.88□□□□□ -0.03
RTN3-210ENST00000540798 BUB1BO60566 1050 aaPredicted RBP14.88□□□□□ -0.03
RTN3-210ENST00000540798 IREB2P48200 963 aaKnown RBP14.88□□□□□ -0.03
RTN3-210ENST00000540798 MOGSQ13724 837 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 PEX26Q7Z412 305 aa14.88□□□□□ -0.03
RTN3-210ENST00000540798 GSPT2Q8IYD1 628 aaKnown RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms