RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ARHGAP8P85298 464 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 RESTQ13127 1097 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 CCDC60Q8IWA6 550 aaPredicted RBP13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 LINC01465Q8N7H1 131 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 NELL1Q92832 810 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 ZNF396Q96N95 335 aaPredicted RBP13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 SDF4Q9BRK5 362 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 RTKNQ9BST9 563 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 MRPL9Q9BYD2 267 aaKnown RBP13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 NRDE2Q9H7Z3 1164 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 ARHGEF3Q9NR81 526 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 SLC2A4RGQ9NR83 387 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 NCDNQ9UBB6 729 aa13.96□□□□□ -0.17
CLSTN3-208ENST00000538933 DSPP15924 2871 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 PKD1L2Q7Z442 2459 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 ANHXE9PGG2 379 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 SPTLC1O15269 473 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 B4GALT3O60512 393 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 ATP2B1P20020 1258 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 RFX1P22670 979 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 U2AF2P26368 475 aaKnown RBP eCLIP13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 NLRP11P59045 1033 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 DCLRE1AQ6PJP8 1040 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 TMEM87AQ8NBN3 555 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 ZBTB44Q8NCP5 570 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 PGBD1Q96JS3 809 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 ANO3Q9BYT9 981 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 FBXO4Q9UKT5 387 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 ZDHHC9Q9Y397 364 aa13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 SETXQ7Z333 2677 aaKnown RBP13.95□□□□□ -0.18
CLSTN3-208ENST00000538933 MEIS1O00470 390 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 DHX15O43143 795 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 LILRB5O75023 590 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 ZC3H11AO75152 810 aaKnown RBP eCLIP13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 KLRC2P26717 231 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 GBP2P32456 591 aaPredicted RBP13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 LMNB2Q03252 620 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 NPY5RQ15761 445 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 INF2Q27J81 1249 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 RILPL1Q5EBL4 403 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 CYP26C1Q6V0L0 522 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 METTL13Q8N6R0 699 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 GBP4Q96PP9 640 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 DDX23Q9BUQ8 820 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 EPC1Q9H2F5 836 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 PARD6AQ9NPB6 346 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 TBC1D13Q9NVG8 400 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 DNAJB4Q9UDY4 337 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 CDV3Q9UKY7 258 aaKnown RBP13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 PCDHGA2Q9Y5H1 932 aa13.94□□□□□ -0.18
CLSTN3-208ENST00000538933 CLUHO75153 1309 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 CCDC195A0A1B0GUA6 201 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 BACH1O14867 736 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 LAMP2P13473 410 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 ZNF76P36508 570 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 CLK2P49760 499 aaKnown RBP13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 CLCN3P51790 818 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 HTR4Q13639 388 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 CEP55Q53EZ4 464 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 FAM160B1Q5W0V3 765 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 SWSAP1Q6NVH7 229 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 PDXDC2PQ6P474 469 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 TBCKQ8TEA7 893 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 ZNF707Q96C28 371 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 NAP1L4Q99733 375 aaKnown RBP13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 TRAIPQ9BWF2 469 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 EMILIN2Q9BXX0 1053 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 ZNF302Q9NR11 478 aa13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 MTF2Q9Y483 593 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 MAFBQ9Y5Q3 323 aaPredicted RBP13.93□□□□□ -0.18
CLSTN3-208ENST00000538933 MEIS3P2A8K0S8 358 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 M0R2N6 131 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 DARSP14868 501 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 FGFR4P22455 802 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 PHKA2P46019 1235 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 TRAPPC10P48553 1259 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 SLC11A1P49279 550 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 KRT85P78386 507 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 CEBPZQ03701 1054 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 COL9A2Q14055 689 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 TTC38Q5R3I4 469 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 FAM173BQ6P4H8 233 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 NEK8Q86SG6 692 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 ZNF280BQ86YH2 543 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 BBXQ8WY36 941 aaPredicted RBP13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 TNFRSF25Q93038 417 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 LPPQ93052 612 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 RPP25Q9BUL9 199 aaKnown RBP13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 MAN1C1Q9NR34 630 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 CFAP45Q9UL16 551 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 CEP131Q9UPN4 1083 aa13.92□□□□□ -0.18
CLSTN3-208ENST00000538933 WDFY3Q8IZQ1 3526 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 CARNS1A5YM72 827 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 FAM205CA6NFA0 338 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 GOLGA6L22H0YM25 854 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 ADAMTS3O15072 1205 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 MARCH6O60337 910 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 OFD1O75665 1012 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 RFPL2O75678 378 aa13.91□□□□□ -0.18
CLSTN3-208ENST00000538933 GPC3P51654 580 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms