RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 GALTP07902 379 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 MAPK7Q13164 816 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 MAPK6Q16659 721 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 TMEM119Q4V9L6 283 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 PLPP4Q5VZY2 271 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 PDE12Q6L8Q7 609 aaKnown RBP16.34■□□□□ 0.21
USP28-204ENST00000537642 CABP7Q86V35 215 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 TMEM173Q86WV6 379 aaPredicted RBP16.34■□□□□ 0.21
USP28-204ENST00000537642 EFHBQ8N7U6 833 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 AK8Q96MA6 479 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 GAD1Q99259 594 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 TCF25Q9BQ70 676 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 APOL6Q9BWW8 343 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 TRIM6Q9C030 488 aaPredicted RBP16.34■□□□□ 0.21
USP28-204ENST00000537642 NT5C3AQ9H0P0 336 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 TLE6Q9H808 572 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 UBN1Q9NPG3 1134 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 MTMR6Q9Y217 621 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 USP20Q9Y2K6 914 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 TDRD15B5MCY1 1934 aaKnown RBP16.34■□□□□ 0.21
USP28-204ENST00000537642 MYH11P35749 1972 aa16.34■□□□□ 0.21
USP28-204ENST00000537642 GRXCR2A6NFK2 248 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 ARL5CA6NH57 179 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 TNFRSF10AO00220 468 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 ACKR2O00590 384 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 PER2O15055 1255 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 HIP1RO75146 1068 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 LIG1P18858 919 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 SLC11A1P49279 550 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 PRPF4BQ13523 1007 aaKnown RBP16.33■□□□□ 0.2
USP28-204ENST00000537642 PTPAQ15257 358 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 PTCRAQ6ISU1 281 aaPredicted RBP16.33■□□□□ 0.2
USP28-204ENST00000537642 FAM173BQ6P4H8 233 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 KCTD17Q8N5Z5 321 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 SYT2Q8N9I0 419 aaPredicted RBP16.33■□□□□ 0.2
USP28-204ENST00000537642 BCL7CQ8WUZ0 217 aaPredicted RBP16.33■□□□□ 0.2
USP28-204ENST00000537642 IGSF21Q96ID5 467 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 CDK5RAP3Q96JB5 506 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 PDZD7Q9H5P4 517 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 NGRNQ9NPE2 291 aaKnown RBP16.33■□□□□ 0.2
USP28-204ENST00000537642 ENTPD7Q9NQZ7 604 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 MIOSQ9NXC5 875 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 KANSL3Q9P2N6 904 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 GIT1Q9Y2X7 761 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 CLIC4Q9Y696 253 aa16.33■□□□□ 0.2
USP28-204ENST00000537642 HIDE1A8MVS5 230 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 N4BP3O15049 544 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 SLC26A4O43511 780 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 GLP2RO95838 553 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 SSBP05455 408 aaKnown RBP eCLIP16.32■□□□□ 0.2
USP28-204ENST00000537642 IL9P15248 144 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 AKAP5P24588 427 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 LONP1P36776 959 aaKnown RBP16.32■□□□□ 0.2
USP28-204ENST00000537642 MLH1P40692 756 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 NPTX2P47972 431 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 EFNA5P52803 228 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 SLC12A3P55017 1021 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 PEX3P56589 373 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 DUSP6Q16828 381 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 HACE1Q8IYU2 909 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 LRRC15Q8TF66 581 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 TMEM169Q96HH4 297 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 ZFP42Q96MM3 310 aa16.32■□□□□ 0.2
USP28-204ENST00000537642 CARNS1A5YM72 827 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 CCDC169A6NNP5 214 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 STX6O43752 255 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 PLA2G4BP0C869 781 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 GUCY2CP25092 1073 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 UBA7P41226 1012 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 NDUFV1P49821 464 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 SCNN1GP51170 649 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 RBM10P98175 930 aaKnown RBP16.31■□□□□ 0.2
USP28-204ENST00000537642 CLUL1Q15846 466 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 TMEM132AQ24JP5 1023 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 PUS10Q3MIT2 529 aaKnown RBP16.31■□□□□ 0.2
USP28-204ENST00000537642 NT5DC1Q5TFE4 455 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 EEF1DP3Q658K8 133 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 TMC7Q7Z402 723 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 DDX53Q86TM3 631 aaKnown RBP16.31■□□□□ 0.2
USP28-204ENST00000537642 GSTCDQ8NEC7 633 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 VN1R2Q8NFZ6 395 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 MSLNLQ96KJ4 702 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 DRC1Q96MC2 740 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 FAM193BQ96PV7 902 aaPredicted RBP16.31■□□□□ 0.2
USP28-204ENST00000537642 CDCA3Q99618 268 aaPredicted RBP16.31■□□□□ 0.2
USP28-204ENST00000537642 TMEM175Q9BSA9 504 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 TIPINQ9BVW5 301 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 VN1R3Q9BXE9 311 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 CLEC1BQ9P126 229 aa16.31■□□□□ 0.2
USP28-204ENST00000537642 SFI1A8K8P3 1242 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 NRP1O14786 923 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 ALDH2P05091 517 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 DSC1Q08554 894 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 RAD51AP2Q09MP3 1159 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 DMP1Q13316 513 aaPredicted RBP16.3■□□□□ 0.2
USP28-204ENST00000537642 KCNC3Q14003 757 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 SMC1AQ14683 1233 aaKnown RBP16.3■□□□□ 0.2
USP28-204ENST00000537642 TAS1R3Q7RTX0 852 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 HSCBQ8IWL3 235 aa16.3■□□□□ 0.2
USP28-204ENST00000537642 COLGALT2Q8IYK4 626 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms