RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 SERPINI2O75830 405 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 CDKL3Q8IVW4 592 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-209ENST00000537178 GFM2Q969S9 779 aaKnown RBP11.28□□□□□ -0.6
CLIP1-209ENST00000537178 TLR7Q9NYK1 1049 aaKnown RBP11.28□□□□□ -0.6
CLIP1-209ENST00000537178 LOC102724159A0A0B4J2E5 919 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 NR3C1P04150 777 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 ASNSP08243 561 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 KCNA2P16389 499 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 PWP2Q15269 919 aaKnown RBP11.28□□□□□ -0.6
CLIP1-209ENST00000537178 BEST2Q8NFU1 509 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 PPP1R16BQ96T49 567 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 SARS2Q9NP81 518 aaKnown RBP11.28□□□□□ -0.6
CLIP1-209ENST00000537178 POLIQ9UNA4 740 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 PDHA1P08559 390 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 TYK2P29597 1187 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 MKRN3Q13064 507 aaKnown RBP11.28□□□□□ -0.6
CLIP1-209ENST00000537178 RABGAP1LQ5R372 815 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 TMEM270Q6UE05 265 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 TMEM179Q6ZVK1 233 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 PODNQ7Z5L7 613 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 TEX9Q8N6V9 391 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 SH3KBP1Q96B97 665 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 MRC1P22897 1456 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 A0A1B0GW55 424 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 PIK3R2O00459 728 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 DEAF1O75398 565 aaPredicted RBP11.28□□□□□ -0.6
CLIP1-209ENST00000537178 DUX4L2P0CJ85 424 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 DUX4L3P0CJ86 424 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 DUX4L4P0CJ87 422 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 DUX4L5P0CJ88 424 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 DUX4L6P0CJ89 424 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 DUX4L7P0CJ90 424 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 KITP10721 976 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 PMS1P54277 932 aaKnown RBP11.28□□□□□ -0.6
CLIP1-209ENST00000537178 CEP55Q53EZ4 464 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 KIRREL3Q8IZU9 778 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 ELMOD1Q8N336 334 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 OR6P1Q8NGX9 317 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 ARHGEF1Q92888 912 aaKnown RBP11.28□□□□□ -0.6
CLIP1-209ENST00000537178 PHF21AQ96BD5 680 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 TGS1Q96RS0 853 aaKnown RBP11.28□□□□□ -0.6
CLIP1-209ENST00000537178 WWP1Q9H0M0 922 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 DBNDD1Q9H9R9 158 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 TBC1D22BQ9NU19 505 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 AIPL1Q9NZN9 384 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 DUX4Q9UBX2 424 aa11.28□□□□□ -0.6
CLIP1-209ENST00000537178 ADAMTS13Q76LX8 1427 aa11.27□□□□□ -0.6
CLIP1-209ENST00000537178 GRID2IPA4D2P6 1211 aa11.27□□□□□ -0.6
CLIP1-209ENST00000537178 DPYSL4O14531 572 aa11.27□□□□□ -0.6
CLIP1-209ENST00000537178 MRPS15P82914 257 aaKnown RBP11.27□□□□□ -0.6
CLIP1-209ENST00000537178 OSBP2Q969R2 916 aa11.27□□□□□ -0.6
CLIP1-209ENST00000537178 FAM53CQ9NYF3 392 aa11.27□□□□□ -0.6
CLIP1-209ENST00000537178 SENP1Q9P0U3 644 aa11.27□□□□□ -0.6
CLIP1-209ENST00000537178 IP6K2Q9UHH9 426 aa11.27□□□□□ -0.6
CLIP1-209ENST00000537178 TTC7AQ9ULT0 858 aaPredicted RBP11.27□□□□□ -0.6
CLIP1-209ENST00000537178 GDAQ9Y2T3 454 aa11.27□□□□□ -0.6
CLIP1-209ENST00000537178 USP17L8P0C7I0 530 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 MARK3P27448 753 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 GCLMP48507 274 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 COL9A3Q14050 684 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-209ENST00000537178 SLFNL1Q499Z3 407 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 EFHC2Q5JST6 749 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 TRIM72Q6ZMU5 477 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 ZNF579Q8NAF0 562 aaKnown RBP11.27□□□□□ -0.61
CLIP1-209ENST00000537178 ZNF564Q8TBZ8 553 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-209ENST00000537178 RNF25Q96BH1 459 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-209ENST00000537178 ZBED2Q9BTP6 218 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 RGPD2P0DJD1 1756 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 CSPG5O95196 566 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 CDH2P19022 906 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-209ENST00000537178 HOXA13P31271 388 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-209ENST00000537178 GNL1P36915 607 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-209ENST00000537178 ABCE1P61221 599 aaKnown RBP11.27□□□□□ -0.61
CLIP1-209ENST00000537178 PSMC1P62191 440 aaKnown RBP11.27□□□□□ -0.61
CLIP1-209ENST00000537178 AP1B1Q10567 949 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 WASHC5Q12768 1159 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 CATSPER3Q86XQ3 398 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 TRIM62Q9BVG3 475 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 ABHD10Q9NUJ1 306 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 DDX56Q9NY93 547 aaKnown RBP11.27□□□□□ -0.61
CLIP1-209ENST00000537178 EHD2Q9NZN4 543 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 SEL1LQ9UBV2 794 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 JCADQ9P266 1359 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 DNAJC6O75061 913 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 CDK8P49336 464 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 SKOR1P84550 965 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 KRT76Q01546 638 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 ZNF568Q3ZCX4 644 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 CC2D1AQ6P1N0 951 aaPredicted RBP11.27□□□□□ -0.61
CLIP1-209ENST00000537178 RHOT1Q8IXI2 618 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 FAM20AQ96MK3 541 aa11.27□□□□□ -0.61
CLIP1-209ENST00000537178 USP42Q9H9J4 1324 aaKnown RBP11.27□□□□□ -0.61
CLIP1-209ENST00000537178 MYBL1P10243 752 aa11.26□□□□□ -0.61
CLIP1-209ENST00000537178 CARSP49589 748 aaKnown RBP11.26□□□□□ -0.61
CLIP1-209ENST00000537178 ACTR2P61160 394 aa11.26□□□□□ -0.61
CLIP1-209ENST00000537178 PDIA2Q13087 525 aaKnown RBP11.26□□□□□ -0.61
CLIP1-209ENST00000537178 RESP18Q5W5W9 173 aa11.26□□□□□ -0.61
CLIP1-209ENST00000537178 TMED8Q6PL24 325 aaPredicted RBP11.26□□□□□ -0.61
CLIP1-209ENST00000537178 SFR1Q86XK3 245 aa11.26□□□□□ -0.61
CLIP1-209ENST00000537178 PUS7LQ9H0K6 701 aaKnown RBP11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms