RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 TMEM67Q5HYA8 995 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 ANGEL2Q5VTE6 544 aaKnown RBP7.29□□□□□ -1.24
USP28-202ENST00000535607 GTF2IRD2BQ6EKJ0 949 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 CYP26C1Q6V0L0 522 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 RASGRP2Q7LDG7 609 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 RALYLQ86SE5 291 aaKnown RBP7.29□□□□□ -1.24
USP28-202ENST00000535607 GTF2IRD2Q86UP8 949 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 TAX1BP1Q86VP1 789 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 JAZF1Q86VZ6 243 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 CERS3Q8IU89 383 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 FMNL3Q8IVF7 1028 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 AMOTL1Q8IY63 956 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 OTUD6BQ8N6M0 293 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 ZBTB38Q8NAP3 1195 aaPredicted RBP7.29□□□□□ -1.24
USP28-202ENST00000535607 BTN2A2Q8WVV5 523 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 KCTD13Q8WZ19 329 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 TCEANC2Q96MN5 208 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 CDADC1Q9BWV3 514 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 CCDC8Q9H0W5 538 aaPredicted RBP7.29□□□□□ -1.24
USP28-202ENST00000535607 BICC1Q9H694 974 aaKnown RBP7.29□□□□□ -1.24
USP28-202ENST00000535607 ANKZF1Q9H8Y5 726 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 TOMM22Q9NS69 142 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 FANCLQ9NW38 375 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 ZNHIT6Q9NWK9 470 aaKnown RBP7.29□□□□□ -1.24
USP28-202ENST00000535607 GOLGA6AQ9NYA3 693 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 PUF60Q9UHX1 559 aaKnown RBP7.29□□□□□ -1.24
USP28-202ENST00000535607 MYO6Q9UM54 1294 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 HPSEQ9Y251 543 aa7.29□□□□□ -1.24
USP28-202ENST00000535607 GPR55Q9Y2T6 319 aaPredicted RBP7.29□□□□□ -1.24
USP28-202ENST00000535607 PITPNM2Q9BZ72 1349 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 CHUKO15111 745 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 PRODHO43272 600 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 FKTNO75072 461 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 ZFYP08048 801 aaPredicted RBP7.28□□□□□ -1.24
USP28-202ENST00000535607 CYP21A2P08686 494 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 GSTM1P09488 218 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 SRFP11831 508 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 HOXA10P31260 410 aaPredicted RBP7.28□□□□□ -1.24
USP28-202ENST00000535607 PLCD1P51178 756 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 GYS2P54840 703 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 KRT83P78385 493 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 AIMP1Q12904 312 aaKnown RBP7.28□□□□□ -1.24
USP28-202ENST00000535607 KARSQ15046 597 aaKnown RBP7.28□□□□□ -1.24
USP28-202ENST00000535607 PARP10Q53GL7 1025 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 TTC39AQ5SRH9 613 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 RESP18Q5W5W9 173 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 ALS2CLQ60I27 953 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 NSMFQ6X4W1 530 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 TTLL7Q6ZT98 887 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 TOGARAM2Q6ZUX3 1019 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 YTHDF3Q7Z739 585 aaKnown RBP7.28□□□□□ -1.24
USP28-202ENST00000535607 TMEM139Q8IV31 216 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 SCUBE1Q8IWY4 988 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 LILRB2Q8N423 598 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 TC2NQ8N9U0 490 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 KBTBD3Q8NAB2 608 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 COG1Q8WTW3 980 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 SECISBP2LQ93073 1101 aaKnown RBP7.28□□□□□ -1.24
USP28-202ENST00000535607 EAF2Q96CJ1 260 aaPredicted RBP7.28□□□□□ -1.24
USP28-202ENST00000535607 CAMKK2Q96RR4 588 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 CAPS2Q9BXY5 557 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 FOXP3Q9BZS1 431 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 HAUS4Q9H6D7 363 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 ATP13A1Q9HD20 1204 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 LZTFL1Q9NQ48 299 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 BCCIPQ9P287 314 aaKnown RBP eCLIP7.28□□□□□ -1.24
USP28-202ENST00000535607 NARFQ9UHQ1 456 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 GGA2Q9UJY4 613 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 MINPP1Q9UNW1 487 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 NFE2L3Q9Y4A8 694 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 BACE2Q9Y5Z0 518 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 CLIC4Q9Y696 253 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 PTCH2Q9Y6C5 1203 aa7.28□□□□□ -1.24
USP28-202ENST00000535607 TRBV23-1A0A0A0MS06 115 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 A0A1B0GUA9 196 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 GOLGA6BA6NDN3 693 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 SRRM3A6NNA2 597 aaPredicted RBP7.27□□□□□ -1.25
USP28-202ENST00000535607 E7EWF7 191 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 STXBP3O00186 592 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 PES1O00541 588 aaKnown RBP7.27□□□□□ -1.25
USP28-202ENST00000535607 SASH1O94885 1247 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 CAMTA2O94983 1202 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 CTDNEP1O95476 244 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 BMP15O95972 392 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 RHOXF2BP0C7M4 288 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 ATP1A3P13637 1013 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 RPL10P27635 214 aaKnown RBP7.27□□□□□ -1.25
USP28-202ENST00000535607 SSTR4P31391 388 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 ECI1P42126 302 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 USP14P54578 494 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 CCT2P78371 535 aaKnown RBP7.27□□□□□ -1.25
USP28-202ENST00000535607 SATB1Q01826 763 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 AKAP17AQ02040 695 aaKnown RBP7.27□□□□□ -1.25
USP28-202ENST00000535607 IFFO1Q0D2I5 559 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 TCIRG1Q13488 830 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 GCKRQ14397 625 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 NR1I3Q14994 352 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 NT5DC1Q5TFE4 455 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 SPATA1Q5VX52 437 aa7.27□□□□□ -1.25
USP28-202ENST00000535607 UBE3BQ7Z3V4 1068 aa7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms