RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	ZNF747	Q9BV97	191 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296	ACE2	Q9BYF1	805 aa	Predicted RBP	3.82	□□□□□ -1.8
CD44-238	ENST00000534296	DPP7	Q9UHL4	492 aa		3.82	□□□□□ -1.8
CD44-238	ENST00000534296		B5MCH6	92 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	CYR61	O00622	381 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	HOXA3	O43365	443 aa	Predicted RBP	3.81	□□□□□ -1.8
CD44-238	ENST00000534296	ZNF202	O95125	648 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	PEX11B	O96011	259 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	FSHB	P01225	129 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	MGAT1	P26572	445 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	ECHS1	P30084	290 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	PTGS2	P35354	604 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	CASR	P41180	1078 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	TUBA3C	Q13748	450 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	TRIM25	Q14258	630 aa	Known RBP	3.81	□□□□□ -1.8
CD44-238	ENST00000534296	PDCD1	Q15116	288 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	UBE3C	Q15386	1083 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	ANO4	Q32M45	955 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	LSM12	Q3MHD2	195 aa	Known RBP	3.81	□□□□□ -1.8
CD44-238	ENST00000534296	METTL24	Q5JXM2	366 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	TUBA3E	Q6PEY2	450 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	DOK3	Q7L591	496 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	NECAB2	Q7Z6G3	386 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	ELOA2	Q8IYF1	753 aa	Predicted RBP	3.81	□□□□□ -1.8
CD44-238	ENST00000534296	SNX33	Q8WV41	574 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	FATE1	Q969F0	183 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	UHRF1	Q96T88	793 aa	Predicted RBP	3.81	□□□□□ -1.8
CD44-238	ENST00000534296	ADI1	Q9BV57	179 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	QRSL1	Q9H0R6	528 aa	Known RBP	3.81	□□□□□ -1.8
CD44-238	ENST00000534296	ZNF703	Q9H7S9	590 aa	Predicted RBP	3.81	□□□□□ -1.8
CD44-238	ENST00000534296	C14orf119	Q9NWQ9	140 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	DNAJC28	Q9NX36	388 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	TMPRSS11E	Q9UL52	423 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	EDAR	Q9UNE0	448 aa		3.81	□□□□□ -1.8
CD44-238	ENST00000534296	REXO2	Q9Y3B8	237 aa	Known RBP	3.81	□□□□□ -1.8
CD44-238	ENST00000534296	AKR1B10	O60218	316 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	ADH4	P08319	380 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	MAK	P20794	623 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	CRHR1	P34998	444 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	PER3	P56645	1201 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	MXRA7	P84157	204 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	CDK17	Q00537	523 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	APBA1	Q02410	837 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	MRPL49	Q13405	166 aa	Known RBP	3.8	□□□□□ -1.8
CD44-238	ENST00000534296	MUM1	Q2TAK8	710 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	MUM1L1	Q5H9M0	696 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	MBNL2	Q5VZF2	373 aa	Known RBP	3.8	□□□□□ -1.8
CD44-238	ENST00000534296	BTNL9	Q6UXG8	535 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	IL17D	Q8TAD2	202 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	ZNF483	Q8TF39	744 aa	Predicted RBP	3.8	□□□□□ -1.8
CD44-238	ENST00000534296	TGFBRAP1	Q8WUH2	860 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	LMBR1	Q8WVP7	490 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	SSH1	Q8WYL5	1049 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	ZNF503	Q96F45	646 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	MNT	Q99583	582 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	PUS7L	Q9H0K6	701 aa	Known RBP	3.8	□□□□□ -1.8
CD44-238	ENST00000534296	IFT122	Q9HBG6	1241 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	GPRC5D	Q9NZD1	345 aa		3.8	□□□□□ -1.8
CD44-238	ENST00000534296	EIF2B4	Q9UI10	523 aa	Known RBP	3.8	□□□□□ -1.8
CD44-238	ENST00000534296	FAM171A2	A8MVW0	826 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	NPIPB8	E9PQR5	432 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	TRIM24	O15164	1050 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	ITGA10	O75578	1167 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	ENDOD1	O94919	500 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	EYA4	O95677	639 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	CFB	P00751	764 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	SPATA31D3	P0C874	917 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	HK1	P19367	917 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	CTSS	P25774	331 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	SCNN1G	P51170	649 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	FAM214A	Q32MH5	1076 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	TOR2A	Q5JU69	321 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	SPTY2D1	Q68D10	685 aa	Predicted RBP	3.79	□□□□□ -1.8
CD44-238	ENST00000534296		Q6ZRM9	215 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	SPATA31D4	Q6ZUB0	917 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	LYSMD2	Q8IV50	215 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	SLC41A1	Q8IVJ1	513 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	MSL3	Q8N5Y2	521 aa	Known RBP	3.79	□□□□□ -1.8
CD44-238	ENST00000534296	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	3.79	□□□□□ -1.8
CD44-238	ENST00000534296	ZFP28	Q8NHY6	868 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	ZCRB1	Q8TBF4	217 aa	Known RBP	3.79	□□□□□ -1.8
CD44-238	ENST00000534296	CACTIN	Q8WUQ7	758 aa	Known RBP	3.79	□□□□□ -1.8
CD44-238	ENST00000534296	PGBD4	Q96DM1	585 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	MENT	Q9BUN1	341 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	GREM2	Q9H772	168 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	RBM12	Q9NTZ6	932 aa	Known RBP	3.79	□□□□□ -1.8
CD44-238	ENST00000534296	SLC5A4	Q9NY91	659 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	SAP30BP	Q9UHR5	308 aa	Known RBP	3.79	□□□□□ -1.8
CD44-238	ENST00000534296	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	3.79	□□□□□ -1.8
CD44-238	ENST00000534296	ATP8A1	Q9Y2Q0	1164 aa		3.79	□□□□□ -1.8
CD44-238	ENST00000534296	CADPS	Q9ULU8	1353 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	DIRC3	C9JPN6	131 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	TEX33	O43247	280 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	TMEM127	O75204	238 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	PRKD3	O94806	890 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	C1S	P09871	688 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	PTPN7	P35236	360 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	CCT2	P78371	535 aa	Known RBP	3.78	□□□□□ -1.8
CD44-238	ENST00000534296	MALL	Q13021	153 aa		3.78	□□□□□ -1.8
CD44-238	ENST00000534296	KLF1	Q13351	362 aa	Predicted RBP	3.78	□□□□□ -1.8

Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms