RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 ID4P47928 161 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 CLCN4P51793 760 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 ME3Q16798 604 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 OTOP3Q7RTS5 596 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 KRT25Q7Z3Z0 450 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 GPR149Q86SP6 731 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 TMEM143Q96AN5 459 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 TMX3Q96JJ7 454 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 IPO9Q96P70 1041 aaKnown RBP17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 KLHL5Q96PQ7 755 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 MINDY3Q9H8M7 445 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 MRPL17Q9NRX2 175 aaKnown RBP17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 STK39Q9UEW8 545 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 VAV3Q9UKW4 847 aa17.55■□□□□ 0.4
CHMP4A-207ENST00000533523 DKC1O60832 514 aaKnown RBP eCLIP17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 KRT37O76014 449 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 DDHD2O94830 711 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 LARGE1O95461 756 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 POMCP01189 267 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 CNPP09543 421 aaKnown RBP17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 NPR3P17342 541 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 AFF1P51825 1210 aaKnown RBP17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 PPP2R5CQ13362 524 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 NPY5RQ15761 445 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 PRPF31Q8WWY3 499 aaKnown RBP17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 RMDN1Q96DB5 314 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 ZSCAN31Q96LW9 406 aaPredicted RBP17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 TMEM175Q9BSA9 504 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 MAN1C1Q9NR34 630 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 ORC3Q9UBD5 711 aaPredicted RBP17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 FBXL21Q9UKT6 434 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 KCNJ14Q9UNX9 436 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 FAN1Q9Y2M0 1017 aa17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 PRG3Q9Y2Y8 225 aaPredicted RBP17.54■□□□□ 0.4
CHMP4A-207ENST00000533523 CCDC194A0A1B0GVG4 234 aa17.53■□□□□ 0.4
CHMP4A-207ENST00000533523 ERLIN2O94905 339 aa17.53■□□□□ 0.4
CHMP4A-207ENST00000533523 RFC5P40937 340 aa17.53■□□□□ 0.4
CHMP4A-207ENST00000533523 LAMTOR4Q0VGL1 99 aa17.53■□□□□ 0.4
CHMP4A-207ENST00000533523 EMC2Q15006 297 aa17.53■□□□□ 0.4
CHMP4A-207ENST00000533523 SRGAP1Q7Z6B7 1085 aa17.53■□□□□ 0.4
CHMP4A-207ENST00000533523 NECAB1Q8N987 351 aa17.53■□□□□ 0.4
CHMP4A-207ENST00000533523 ZNF579Q8NAF0 562 aaKnown RBP17.53■□□□□ 0.4
CHMP4A-207ENST00000533523 LXNQ9BS40 222 aa17.53■□□□□ 0.4
CHMP4A-207ENST00000533523 HERC2P3Q9BVR0 1158 aa17.53■□□□□ 0.4
CHMP4A-207ENST00000533523 KANSL3Q9P2N6 904 aa17.53■□□□□ 0.4
CHMP4A-207ENST00000533523 WRAP73Q9P2S5 460 aaPredicted RBP17.53■□□□□ 0.4
CHMP4A-207ENST00000533523 COL4A3Q01955 1670 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 NRP1O14786 923 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 MARCH6O60337 910 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 CTDNEP1O95476 244 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 P4HBP07237 508 aaKnown RBP17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 OR1G1P47890 313 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 CLCN5P51795 746 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 TDGQ13569 410 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 UBXN11Q5T124 520 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 NCAPH2Q6IBW4 605 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 MRPL10Q7Z7H8 261 aaKnown RBP17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 NEK8Q86SG6 692 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 EXOC8Q8IYI6 725 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 RNF149Q8NC42 400 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 FAM20AQ96MK3 541 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 PHF20Q9BVI0 1012 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 DHX33Q9H6R0 707 aaKnown RBP17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 BRMS1Q9HCU9 246 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 KCNMB3Q9NPA1 279 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 SH2B1Q9NRF2 756 aaPredicted RBP17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 DAXXQ9UER7 740 aaPredicted RBP17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 DUSP12Q9UNI6 340 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 PPME1Q9Y570 386 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 MIA3Q5JRA6 1907 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 MYH15Q9Y2K3 1946 aa17.52■□□□□ 0.4
CHMP4A-207ENST00000533523 SOD2P04179 222 aa17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 ALDH2P05091 517 aa17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 ADH1AP07327 375 aa17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 MYBP10242 640 aa17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 ITGA4P13612 1032 aa17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 GCFC2P16383 781 aaKnown RBP17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 HOXA11P31270 313 aaPredicted RBP17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 MLH1P40692 756 aa17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 C15orf39Q6ZRI6 1047 aa17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 SIX5Q8N196 739 aa17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 NSUN7Q8NE18 718 aaKnown RBP17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 TCP11Q8WWU5 503 aa17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 NKD2Q969F2 451 aaPredicted RBP17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 KCNK12Q9HB15 430 aa17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 MARCH5Q9NX47 278 aa17.51■□□□□ 0.39
CHMP4A-207ENST00000533523 CLUHO75153 1309 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 GAS2O43903 313 aaKnown RBP17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 CCNT1O60563 726 aaKnown RBP17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 GLUD1P00367 558 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 NCLP19338 710 aaKnown RBP17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 RFX1P22670 979 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 YWHABP31946 246 aaKnown RBP17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 GBP2P32456 591 aaPredicted RBP17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 GLUD2P49448 558 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 CYP4A11Q02928 519 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 XKR9Q5GH70 373 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 ELMSAN1Q6PJG2 1045 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 FERMT3Q86UX7 667 aa17.5■□□□□ 0.39
CHMP4A-207ENST00000533523 POTEDQ86YR6 584 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms