RNA–Protein interactions for RNA: ENST00000532935.5

CPSF1-210, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-210ENST00000532935 LRRC15Q8TF66 581 aa16.95■□□□□ 0.3
CPSF1-210ENST00000532935 EPSTI1Q96J88 318 aa16.95■□□□□ 0.3
CPSF1-210ENST00000532935 RNF39Q9H2S5 420 aa16.95■□□□□ 0.3
CPSF1-210ENST00000532935 NXF3Q9H4D5 531 aaKnown RBP16.95■□□□□ 0.3
CPSF1-210ENST00000532935 PDZD7Q9H5P4 517 aa16.95■□□□□ 0.3
CPSF1-210ENST00000532935 NRDE2Q9H7Z3 1164 aa16.95■□□□□ 0.3
CPSF1-210ENST00000532935 UBE2ZQ9H832 354 aaPredicted RBP16.95■□□□□ 0.3
CPSF1-210ENST00000532935 C17orf75Q9HAS0 396 aa16.95■□□□□ 0.3
CPSF1-210ENST00000532935 BLOC1S4Q9NUP1 217 aa16.95■□□□□ 0.3
CPSF1-210ENST00000532935 SPG21Q9NZD8 308 aa16.95■□□□□ 0.3
CPSF1-210ENST00000532935 KCND2Q9NZV8 630 aa16.95■□□□□ 0.3
CPSF1-210ENST00000532935 LZTS1Q9Y250 596 aa16.95■□□□□ 0.3
CPSF1-210ENST00000532935 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-210ENST00000532935 SFI1A8K8P3 1242 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 K7ERI5 159 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 ZC3H11AO75152 810 aaKnown RBP eCLIP16.94■□□□□ 0.3
CPSF1-210ENST00000532935 ZSCAN22P10073 491 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-210ENST00000532935 NASPP49321 788 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-210ENST00000532935 ALDH7A1P49419 539 aaKnown RBP16.94■□□□□ 0.3
CPSF1-210ENST00000532935 AFF1P51825 1210 aaKnown RBP16.94■□□□□ 0.3
CPSF1-210ENST00000532935 TMEM132AQ24JP5 1023 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 AAK1Q2M2I8 961 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 ARSHQ5FYA8 562 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 FOXD4L5Q5VV16 416 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-210ENST00000532935 USP49Q70CQ1 688 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 SLC39A11Q8N1S5 342 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 FOXD4L4Q8WXT5 416 aaPredicted RBP16.94■□□□□ 0.3
CPSF1-210ENST00000532935 MRPS27Q92552 414 aaKnown RBP16.94■□□□□ 0.3
CPSF1-210ENST00000532935 SYMPKQ92797 1274 aaKnown RBP16.94■□□□□ 0.3
CPSF1-210ENST00000532935 CLIC6Q96NY7 704 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 APOL6Q9BWW8 343 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 KMT5AQ9NQR1 393 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 TLR9Q9NR96 1032 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 KANSL3Q9P2N6 904 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 USP20Q9Y2K6 914 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 PHLPP2Q6ZVD8 1323 aa16.94■□□□□ 0.3
CPSF1-210ENST00000532935 CITO14578 2027 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 NPHP3-ACAD11A0A0J9YXS1 232 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 CARNS1A5YM72 827 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 ARL5CA6NH57 179 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 NT5C1B-RDH14C9J2C7 533 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 INPPL1O15357 1258 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 ERVFC1P60507 584 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 KRT17Q04695 432 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 HYAL1Q12794 435 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 DHX8Q14562 1220 aaKnown RBP16.93■□□□□ 0.3
CPSF1-210ENST00000532935 COL19A1Q14993 1142 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 NT5DC1Q5TFE4 455 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 GPBP1Q86WP2 473 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 ZNF280BQ86YH2 543 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 KRI1Q8N9T8 703 aaKnown RBP16.93■□□□□ 0.3
CPSF1-210ENST00000532935 RAD54LQ92698 747 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 PPP2R3CQ969Q6 453 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 PABPC5Q96DU9 382 aaKnown RBP16.93■□□□□ 0.3
CPSF1-210ENST00000532935 ZNF396Q96N95 335 aaPredicted RBP16.93■□□□□ 0.3
CPSF1-210ENST00000532935 GAD1Q99259 594 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 GBP3Q9H0R5 595 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 TMEM134Q9H6X4 195 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 ARHGAP28Q9P2N2 729 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 DNAJB4Q9UDY4 337 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 PUF60Q9UHX1 559 aaKnown RBP16.93■□□□□ 0.3
CPSF1-210ENST00000532935 GIT1Q9Y2X7 761 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 PCDHGC5Q9Y5F6 944 aa16.93■□□□□ 0.3
CPSF1-210ENST00000532935 FSCN2O14926 492 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 NCK2O43639 380 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 B4GALT3O60512 393 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 DDHD2O94830 711 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 F13A1P00488 732 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 POMCP01189 267 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 GALTP07902 379 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 PLS3P13797 630 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 AKAP5P24588 427 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 MLH1P40692 756 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 MCM6Q14566 821 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 STK38Q15208 465 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 EEF1DP3Q658K8 133 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 PDE12Q6L8Q7 609 aaKnown RBP16.92■□□□□ 0.3
CPSF1-210ENST00000532935 ADGRD2Q7Z7M1 963 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 LINC00301Q8NCQ3 95 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 MICAL1Q8TDZ2 1067 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 TMEM169Q96HH4 297 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 FAM193BQ96PV7 902 aaPredicted RBP16.92■□□□□ 0.3
CPSF1-210ENST00000532935 ADPGKQ9BRR6 497 aa16.92■□□□□ 0.3
CPSF1-210ENST00000532935 NTPCRQ9BSD7 190 aaKnown RBP16.92■□□□□ 0.3
CPSF1-210ENST00000532935 COL25A1Q9BXS0 654 aaPredicted RBP16.92■□□□□ 0.3
CPSF1-210ENST00000532935 TFIP11Q9UBB9 837 aaKnown RBP16.92■□□□□ 0.3
CPSF1-210ENST00000532935 ZMYM2Q9UBW7 1377 aa16.91■□□□□ 0.3
CPSF1-210ENST00000532935 TTC28Q96AY4 2481 aa16.91■□□□□ 0.3
CPSF1-210ENST00000532935 MUC3AQ02505 3323 aa16.91■□□□□ 0.3
CPSF1-210ENST00000532935 C5orf42Q9H799 3197 aa16.91■□□□□ 0.3
CPSF1-210ENST00000532935 DLL1O00548 723 aa16.91■□□□□ 0.3
CPSF1-210ENST00000532935 SLC16A4O15374 487 aa16.91■□□□□ 0.3
CPSF1-210ENST00000532935 KCNA5P22460 613 aa16.91■□□□□ 0.3
CPSF1-210ENST00000532935 GTF2F1P35269 517 aaKnown RBP eCLIP16.91■□□□□ 0.3
CPSF1-210ENST00000532935 TXLNAP40222 546 aa16.91■□□□□ 0.3
CPSF1-210ENST00000532935 SLC11A1P49279 550 aa16.91■□□□□ 0.3
CPSF1-210ENST00000532935 KCNQ1P51787 676 aa16.91■□□□□ 0.3
CPSF1-210ENST00000532935 CACNB1Q02641 598 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-210ENST00000532935 PKP1Q13835 747 aa16.91■□□□□ 0.3
CPSF1-210ENST00000532935 ATF7IP2Q5U623 682 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms