RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 CA3P07451 260 aa27.29■■□□□ 1.96
USP48-214ENST00000532737 GATMP50440 423 aa27.29■■□□□ 1.96
USP48-214ENST00000532737 ASIC1P78348 528 aa27.29■■□□□ 1.96
USP48-214ENST00000532737 CUL4BQ13620 913 aa27.29■■□□□ 1.96
USP48-214ENST00000532737 HERC4Q5GLZ8 1057 aaPredicted RBP27.29■■□□□ 1.96
USP48-214ENST00000532737 EEF1DP3Q658K8 133 aa27.29■■□□□ 1.96
USP48-214ENST00000532737 KRBA2Q6ZNG9 492 aa27.29■■□□□ 1.96
USP48-214ENST00000532737 CLEC17AQ6ZS10 378 aa27.29■■□□□ 1.96
USP48-214ENST00000532737 CCDC65Q8IXS2 484 aa27.29■■□□□ 1.96
USP48-214ENST00000532737 FMR1NBQ8N0W7 255 aaPredicted RBP27.29■■□□□ 1.96
USP48-214ENST00000532737 ENGASEQ8NFI3 743 aa27.29■■□□□ 1.96
USP48-214ENST00000532737 PDZD7Q9H5P4 517 aa27.29■■□□□ 1.96
USP48-214ENST00000532737 RNF19AQ9NV58 838 aa27.29■■□□□ 1.96
USP48-214ENST00000532737 RNF216Q9NWF9 866 aaPredicted RBP27.29■■□□□ 1.96
USP48-214ENST00000532737 MYO9BQ13459 2157 aa27.28■■□□□ 1.96
USP48-214ENST00000532737 GBF1Q92538 1859 aa27.28■■□□□ 1.96
USP48-214ENST00000532737 H0YCG3 227 aa27.28■■□□□ 1.96
USP48-214ENST00000532737 EOMESO95936 686 aa27.28■■□□□ 1.96
USP48-214ENST00000532737 FGFR1P11362 822 aa27.28■■□□□ 1.96
USP48-214ENST00000532737 SKIP12755 728 aa27.28■■□□□ 1.96
USP48-214ENST00000532737 RAB27AP51159 221 aa27.28■■□□□ 1.96
USP48-214ENST00000532737 TMEM132AQ24JP5 1023 aa27.28■■□□□ 1.96
USP48-214ENST00000532737 MAFAQ8NHW3 353 aaPredicted RBP27.28■■□□□ 1.96
USP48-214ENST00000532737 SP7Q8TDD2 431 aaPredicted RBP27.28■■□□□ 1.96
USP48-214ENST00000532737 ZNF689Q96CS4 500 aaPredicted RBP27.28■■□□□ 1.96
USP48-214ENST00000532737 TARS2Q9BW92 718 aaKnown RBP27.28■■□□□ 1.96
USP48-214ENST00000532737 RC3H2Q9HBD1 1191 aaKnown RBP27.28■■□□□ 1.96
USP48-214ENST00000532737 TBC1D7Q9P0N9 293 aa27.28■■□□□ 1.96
USP48-214ENST00000532737 SEL1LQ9UBV2 794 aa27.28■■□□□ 1.96
USP48-214ENST00000532737 SNW1Q13573 536 aaKnown RBP27.27■■□□□ 1.96
USP48-214ENST00000532737 ZC2HC1CQ53FD0 456 aaPredicted RBP27.27■■□□□ 1.96
USP48-214ENST00000532737 ATF7IP2Q5U623 682 aa27.27■■□□□ 1.96
USP48-214ENST00000532737 SLC27A1Q6PCB7 646 aa27.27■■□□□ 1.96
USP48-214ENST00000532737 ZNF720Q7Z2F6 126 aa27.27■■□□□ 1.96
USP48-214ENST00000532737 MRPL10Q7Z7H8 261 aaKnown RBP27.27■■□□□ 1.96
USP48-214ENST00000532737 SMG8Q8ND04 991 aaKnown RBP27.27■■□□□ 1.96
USP48-214ENST00000532737 CNNM3Q8NE01 707 aa27.27■■□□□ 1.96
USP48-214ENST00000532737 LPPQ93052 612 aa27.27■■□□□ 1.96
USP48-214ENST00000532737 ACO2Q99798 780 aaKnown RBP27.27■■□□□ 1.96
USP48-214ENST00000532737 MRPL4Q9BYD3 311 aaKnown RBP27.27■■□□□ 1.96
USP48-214ENST00000532737 ST6GALNAC4Q9H4F1 302 aa27.27■■□□□ 1.96
USP48-214ENST00000532737 TBX20Q9UMR3 447 aa27.27■■□□□ 1.96
USP48-214ENST00000532737 MYH11P35749 1972 aa27.27■■□□□ 1.96
USP48-214ENST00000532737 MEIS3P2A8K0S8 358 aa27.26■■□□□ 1.95
USP48-214ENST00000532737 N4BP3O15049 544 aa27.26■■□□□ 1.95
USP48-214ENST00000532737 NPTXRO95502 500 aa27.26■■□□□ 1.95
USP48-214ENST00000532737 GTF2BQ00403 316 aa27.26■■□□□ 1.95
USP48-214ENST00000532737 FAM160A1Q05DH4 1040 aa27.26■■□□□ 1.95
USP48-214ENST00000532737 STRN3Q13033 797 aa27.26■■□□□ 1.95
USP48-214ENST00000532737 COASYQ13057 564 aa27.26■■□□□ 1.95
USP48-214ENST00000532737 HPS3Q969F9 1004 aa27.26■■□□□ 1.95
USP48-214ENST00000532737 MRPL44Q9H9J2 332 aaKnown RBP27.26■■□□□ 1.95
USP48-214ENST00000532737 OLFML3Q9NRN5 406 aa27.26■■□□□ 1.95
USP48-214ENST00000532737 TNFSF13BQ9Y275 285 aa27.26■■□□□ 1.95
USP48-214ENST00000532737 GTPBP6O43824 516 aaPredicted RBP27.25■■□□□ 1.95
USP48-214ENST00000532737 PRPF40AO75400 957 aaKnown RBP27.25■■□□□ 1.95
USP48-214ENST00000532737 SCP2P22307 547 aa27.25■■□□□ 1.95
USP48-214ENST00000532737 CLLU1OSQ5K130 101 aa27.25■■□□□ 1.95
USP48-214ENST00000532737 UNC13DQ70J99 1090 aa27.25■■□□□ 1.95
USP48-214ENST00000532737 STRA6Q9BX79 667 aa27.25■■□□□ 1.95
USP48-214ENST00000532737 FGFBP2Q9BYJ0 223 aa27.25■■□□□ 1.95
USP48-214ENST00000532737 SLC28A3Q9HAS3 691 aa27.25■■□□□ 1.95
USP48-214ENST00000532737 HES2Q9Y543 173 aa27.25■■□□□ 1.95
USP48-214ENST00000532737 IPPQ9Y573 584 aa27.25■■□□□ 1.95
USP48-214ENST00000532737 VCANP13611 3396 aa27.25■■□□□ 1.95
USP48-214ENST00000532737 COL4A6Q14031 1691 aa27.24■■□□□ 1.95
USP48-214ENST00000532737 LINC01553A4QN01 128 aa27.24■■□□□ 1.95
USP48-214ENST00000532737 CASP5P51878 434 aa27.24■■□□□ 1.95
USP48-214ENST00000532737 TAP1Q03518 808 aa27.24■■□□□ 1.95
USP48-214ENST00000532737 PAN2Q504Q3 1202 aaKnown RBP27.24■■□□□ 1.95
USP48-214ENST00000532737 AGMOQ6ZNB7 445 aa27.24■■□□□ 1.95
USP48-214ENST00000532737 RNF39Q9H2S5 420 aa27.24■■□□□ 1.95
USP48-214ENST00000532737 PTPRHQ9HD43 1115 aa27.24■■□□□ 1.95
USP48-214ENST00000532737 PVALEFA0A1B0GWK0 134 aa27.23■■□□□ 1.95
USP48-214ENST00000532737 KLRC4O43908 158 aa27.23■■□□□ 1.95
USP48-214ENST00000532737 PPP1R37O75864 691 aa27.23■■□□□ 1.95
USP48-214ENST00000532737 PRR29P0C7W0 189 aa27.23■■□□□ 1.95
USP48-214ENST00000532737 BTG3Q14201 252 aaPredicted RBP27.23■■□□□ 1.95
USP48-214ENST00000532737 PPP2R2DQ66LE6 453 aa27.23■■□□□ 1.95
USP48-214ENST00000532737 ZPBP2Q6X784 338 aa27.23■■□□□ 1.95
USP48-214ENST00000532737 SPRED2Q7Z698 418 aa27.23■■□□□ 1.95
USP48-214ENST00000532737 CMTR2Q8IYT2 770 aaKnown RBP27.23■■□□□ 1.95
USP48-214ENST00000532737 PGBD4Q96DM1 585 aa27.23■■□□□ 1.95
USP48-214ENST00000532737 TRIM6Q9C030 488 aaPredicted RBP27.23■■□□□ 1.95
USP48-214ENST00000532737 TMEM117Q9H0C3 514 aa27.23■■□□□ 1.95
USP48-214ENST00000532737 NXF3Q9H4D5 531 aaKnown RBP27.23■■□□□ 1.95
USP48-214ENST00000532737 CHD9Q3L8U1 2897 aa27.23■■□□□ 1.95
USP48-214ENST00000532737 TBKBP1A7MCY6 615 aa27.22■■□□□ 1.95
USP48-214ENST00000532737 ABLIM1O14639 778 aa27.22■■□□□ 1.95
USP48-214ENST00000532737 HOXA2O43364 376 aa27.22■■□□□ 1.95
USP48-214ENST00000532737 NR1I2O75469 434 aa27.22■■□□□ 1.95
USP48-214ENST00000532737 GCNT3O95395 438 aa27.22■■□□□ 1.95
USP48-214ENST00000532737 MYBP10242 640 aa27.22■■□□□ 1.95
USP48-214ENST00000532737 FOSL2P15408 326 aa27.22■■□□□ 1.95
USP48-214ENST00000532737 PROZP22891 400 aa27.22■■□□□ 1.95
USP48-214ENST00000532737 EHHADHQ08426 723 aa27.22■■□□□ 1.95
USP48-214ENST00000532737 GLIS3Q8NEA6 775 aa27.22■■□□□ 1.95
USP48-214ENST00000532737 HELQQ8TDG4 1101 aa27.22■■□□□ 1.95
USP48-214ENST00000532737 ZBTB45Q96K62 511 aaPredicted RBP27.22■■□□□ 1.95
USP48-214ENST00000532737 CASD1Q96PB1 797 aa27.22■■□□□ 1.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms