RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 LRRC55Q6ZSA7 311 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 TAS1R3Q7RTX0 852 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 HACE1Q8IYU2 909 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 RSAD1Q9HA92 442 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 UBN1Q9NPG3 1134 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 TYW1Q9NV66 732 aaKnown RBP16.56■□□□□ 0.24
CPSF1-208ENST00000532560 PCDHA7Q9UN72 937 aa16.56■□□□□ 0.24
CPSF1-208ENST00000532560 INPPL1O15357 1258 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 SLC16A4O15374 487 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 TBCAO75347 108 aaKnown RBP16.55■□□□□ 0.24
CPSF1-208ENST00000532560 OFD1O75665 1012 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 FAM13AO94988 1023 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 NPTXRO95502 500 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 KRT18P05783 430 aaKnown RBP16.55■□□□□ 0.24
CPSF1-208ENST00000532560 ITGA4P13612 1032 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 LIG1P18858 919 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 SCP2P22307 547 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 NCKAP1LP55160 1127 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 E2F4Q16254 413 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 PTPROQ16827 1216 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 LONRF3Q496Y0 759 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 NOMO2Q5JPE7 1267 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 SPOUT1Q5T280 376 aaKnown RBP16.55■□□□□ 0.24
CPSF1-208ENST00000532560 NT5DC1Q5TFE4 455 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 SV2BQ7L1I2 683 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 CDR2LQ86X02 465 aaPredicted RBP16.55■□□□□ 0.24
CPSF1-208ENST00000532560 COLGALT1Q8NBJ5 622 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 TMEM161BQ8NDZ6 487 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 MRPL38Q96DV4 380 aaKnown RBP16.55■□□□□ 0.24
CPSF1-208ENST00000532560 ADPGKQ9BRR6 497 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 LMAN2LQ9H0V9 348 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 NXF3Q9H4D5 531 aaKnown RBP16.55■□□□□ 0.24
CPSF1-208ENST00000532560 PARVGQ9HBI0 331 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 PCDHB12Q9Y5F1 795 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 COL6A3P12111 3177 aa16.55■□□□□ 0.24
CPSF1-208ENST00000532560 PRRC2BQ5JSZ5 2229 aaKnown RBP16.54■□□□□ 0.24
CPSF1-208ENST00000532560 MAPTP10636 758 aaKnown RBP16.54■□□□□ 0.24
CPSF1-208ENST00000532560 NUCB2P80303 420 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 TMEM132AQ24JP5 1023 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 DCAF4L1Q3SXM0 396 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 ATF7IP2Q5U623 682 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 RESP18Q5W5W9 173 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 PDILTQ8N807 584 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 KLHL23Q8NBE8 558 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 URGCPQ8TCY9 931 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 LEO1Q8WVC0 666 aaPredicted RBP16.54■□□□□ 0.24
CPSF1-208ENST00000532560 MRPL4Q9BYD3 311 aaKnown RBP16.54■□□□□ 0.24
CPSF1-208ENST00000532560 CUEDC2Q9H467 287 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 TBC1D13Q9NVG8 400 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 PLAGL2Q9UPG8 496 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 TNFSF13BQ9Y275 285 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 INPP5FQ9Y2H2 1132 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 HES2Q9Y543 173 aa16.54■□□□□ 0.24
CPSF1-208ENST00000532560 CARNS1A5YM72 827 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 MYMKA6NI61 221 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 ITGB1P05556 798 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 PPM1AP35813 382 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 TIGD5Q53EQ6 642 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 EEF1DP3Q658K8 133 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 APBB1IPQ7Z5R6 666 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-208ENST00000532560 MYCT1Q8N699 235 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 DDX12PQ92771 950 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 SPATA32Q96LK8 384 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 ZNF558Q96NG5 402 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 ACO2Q99798 780 aaKnown RBP16.53■□□□□ 0.24
CPSF1-208ENST00000532560 PANK2Q9BZ23 570 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 SCAND2PQ9GZW5 306 aaPredicted RBP16.53■□□□□ 0.24
CPSF1-208ENST00000532560 RNF39Q9H2S5 420 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 TNMDQ9H2S6 317 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 MAGEF1Q9HAY2 307 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 KANSL3Q9P2N6 904 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 USP20Q9Y2K6 914 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 GIT1Q9Y2X7 761 aa16.53■□□□□ 0.24
CPSF1-208ENST00000532560 ARL5CA6NH57 179 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 K7ENM7 598 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 GRM6O15303 877 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 TRAK2O60296 914 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 ABCD1P33897 745 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 DEKP35659 375 aaKnown RBP16.52■□□□□ 0.24
CPSF1-208ENST00000532560 MLH1P40692 756 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 UBE3AQ05086 875 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 STRN3Q13033 797 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 KCNT2Q6UVM3 1135 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 HAUS6Q7Z4H7 955 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 THNSL1Q8IYQ7 743 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 MICALL1Q8N3F8 863 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 IQUBQ8NA54 791 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 SLC17A8Q8NDX2 589 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 DNAJC19Q96DA6 116 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 CHAMP1Q96JM3 812 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 FIZ1Q96SL8 496 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 PTPRHQ9HD43 1115 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 ALG13Q9NP73 1137 aaKnown RBP16.52■□□□□ 0.24
CPSF1-208ENST00000532560 FAM13BQ9NYF5 915 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 SEL1LQ9UBV2 794 aa16.52■□□□□ 0.24
CPSF1-208ENST00000532560 ATG2AQ2TAZ0 1938 aa16.52■□□□□ 0.23
CPSF1-208ENST00000532560 PLXNA4Q9HCM2 1894 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 FRMD3A2A2Y4 597 aa16.51■□□□□ 0.23
CPSF1-208ENST00000532560 ZC3H11AO75152 810 aaKnown RBP eCLIP16.51■□□□□ 0.23
CPSF1-208ENST00000532560 FGF18O76093 207 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms