RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 SLC7A6OSQ96CW6 309 aaPredicted RBP6.52□□□□□ -1.37
CD44-231ENST00000531110 RAX2Q96IS3 184 aa6.52□□□□□ -1.37
CD44-231ENST00000531110 RBM15Q96T37 977 aaKnown RBP eCLIP6.52□□□□□ -1.37
CD44-231ENST00000531110 SSBP3Q9BWW4 388 aaPredicted RBP6.52□□□□□ -1.37
CD44-231ENST00000531110 MEGF9Q9H1U4 602 aa6.52□□□□□ -1.37
CD44-231ENST00000531110 PTPN22Q9Y2R2 807 aa6.52□□□□□ -1.37
CD44-231ENST00000531110 MTSS1O43312 755 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 PRKD3O94806 890 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 MTHFD2P13995 350 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 IBSPP21815 317 aaPredicted RBP6.51□□□□□ -1.37
CD44-231ENST00000531110 COPB2P35606 906 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 ERVK-21P61565 698 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 TRAF1Q13077 416 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 PDCD1Q15116 288 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 RABEP1Q15276 862 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 TAF7Q15545 349 aaPredicted RBP6.51□□□□□ -1.37
CD44-231ENST00000531110 RNF151Q2KHN1 245 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 ZNF771Q7L3S4 317 aaPredicted RBP6.51□□□□□ -1.37
CD44-231ENST00000531110 CLEC14AQ86T13 490 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 FERMT3Q86UX7 667 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 UNC5BQ8IZJ1 945 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 TTC9BQ8N6N2 239 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 OR14C36Q8NHC7 312 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 CFHR4Q92496 578 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 NEIL1Q96FI4 390 aaPredicted RBP6.51□□□□□ -1.37
CD44-231ENST00000531110 AHCYL2Q96HN2 611 aaKnown RBP6.51□□□□□ -1.37
CD44-231ENST00000531110 KIAA1683Q9H0B3 1180 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 MS4A5Q9H3V2 200 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 CXorf56Q9H5V9 222 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 UPF2Q9HAU5 1272 aaKnown RBP6.51□□□□□ -1.37
CD44-231ENST00000531110 GRPEL1Q9HAV7 217 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 SLC5A4Q9NY91 659 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 PPP4R1LQ9P1A2 415 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 SUN2Q9UH99 717 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 PRSS50Q9UI38 385 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 NR2E1Q9Y466 385 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 RPS6KL1Q9Y6S9 549 aa6.51□□□□□ -1.37
CD44-231ENST00000531110 VIRMAQ69YN4 1812 aaKnown RBP6.5□□□□□ -1.37
CD44-231ENST00000531110 CUX2O14529 1486 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 A0A0A6YYK5 440 aaPredicted RBP6.5□□□□□ -1.37
CD44-231ENST00000531110 H0YHG0 523 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 PPFIA2O75334 1257 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 FRAT2O75474 233 aaPredicted RBP6.5□□□□□ -1.37
CD44-231ENST00000531110 REC8O95072 547 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 PCDH8O95206 1070 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 PAX7P23759 505 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 CASQ1P31415 396 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 RRADP55042 308 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 NRG3P56975 720 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 MRPS9P82933 396 aaKnown RBP6.5□□□□□ -1.37
CD44-231ENST00000531110 MEF2AQ02078 507 aaPredicted RBP6.5□□□□□ -1.37
CD44-231ENST00000531110 AMOTQ4VCS5 1084 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 PITRM1Q5JRX3 1037 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 LILRA6Q6PI73 481 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 LYSMD2Q8IV50 215 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 GLB1L2Q8IW92 636 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 GAB3Q8WWW8 586 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 SSH1Q8WYL5 1049 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 RABGGTAQ92696 567 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 RELTQ969Z4 430 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 LMF1Q96S06 567 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 SOX7Q9BT81 388 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 POLR3CQ9BUI4 534 aaPredicted RBP6.5□□□□□ -1.37
CD44-231ENST00000531110 KRTAP9-9Q9BYP9 154 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 KRTAP9-4Q9BYQ2 154 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 SLC6A15Q9H2J7 730 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 NELFAQ9H3P2 528 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 C14orf93Q9H972 538 aaKnown RBP6.5□□□□□ -1.37
CD44-231ENST00000531110 CHCHD3Q9NX63 227 aaKnown RBP6.5□□□□□ -1.37
CD44-231ENST00000531110 PUF60Q9UHX1 559 aaKnown RBP6.5□□□□□ -1.37
CD44-231ENST00000531110 SUFUQ9UMX1 484 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 OAZ3Q9UMX2 235 aa6.5□□□□□ -1.37
CD44-231ENST00000531110 DDX49Q9Y6V7 483 aaKnown RBP6.5□□□□□ -1.37
CD44-231ENST00000531110 KDRP35968 1356 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 ZMYM3Q14202 1370 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 LCHNA4D1U4 455 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 DAPK3O43293 454 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 SYN1P17600 705 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 XPAP23025 273 aaPredicted RBP6.49□□□□□ -1.37
CD44-231ENST00000531110 ABCD1P33897 745 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 ADCY7P51828 1080 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 KRT85P78386 507 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 SPIDRQ14159 915 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 PDCD2Q16342 344 aaPredicted RBP6.49□□□□□ -1.37
CD44-231ENST00000531110 TBR1Q16650 682 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 ZSCAN26Q16670 478 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 CCDC181Q5TID7 509 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 GLB1LQ6UWU2 654 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 ANKRD13BQ86YJ7 626 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 PRPF38AQ8NAV1 312 aaKnown RBP6.49□□□□□ -1.37
CD44-231ENST00000531110 FAM184AQ8NB25 1140 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 STAG1Q8WVM7 1258 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 GCDHQ92947 438 aaPredicted RBP6.49□□□□□ -1.37
CD44-231ENST00000531110 SAMD11Q96NU1 681 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 MMTAG2Q9BU76 263 aaKnown RBP6.49□□□□□ -1.37
CD44-231ENST00000531110 ANO3Q9BYT9 981 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 CDY2AQ9Y6F7 541 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 ZNF536O15090 1300 aa6.49□□□□□ -1.37
CD44-231ENST00000531110 NPEPPSL1A6NEC2 478 aa6.48□□□□□ -1.37
CD44-231ENST00000531110 TRIM75PA6NK02 468 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms